View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19794_high_5 (Length: 358)

Name: NF19794_high_5
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19794_high_5
NF19794_high_5
[»] chr4 (10 HSPs)
chr4 (3-347)||(30264420-30264764)
chr4 (3-347)||(30287424-30287768)
chr4 (3-265)||(30271314-30271576)
chr4 (3-265)||(30280613-30280875)
chr4 (3-265)||(30304381-30304643)
chr4 (3-108)||(30048618-30048723)
chr4 (3-108)||(30062959-30063064)
chr4 (3-96)||(30228757-30228850)
chr4 (3-114)||(30032372-30032483)
chr4 (3-101)||(30220209-30220307)
[»] scaffold0024 (2 HSPs)
scaffold0024 (3-90)||(79592-79679)
scaffold0024 (3-87)||(72528-72612)
[»] chr7 (1 HSPs)
chr7 (3-39)||(2311381-2311417)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 30264420 - 30264764
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264420 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 30264519  T
Q  103 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264520 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 30264619  T
Q  203 tcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgtta 302  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30264620 tcttttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgtta 30264719  T
Q  303 tatgatagatatgtaaggaaatataaacactaaaacacataaaaa 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  30264720 tatgataaatatgtaaggaaatataaacactaaaacacataaaaa 30264764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 30287768 - 30287424
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287768 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 30287669  T
Q  103 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287668 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 30287569  T
Q  203 tcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgtta 302  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30287568 tcttttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgtta 30287469  T
Q  303 tatgatagatatgtaaggaaatataaacactaaaacacataaaaa 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  30287468 tatgataaatatgtaaggaaatataaacactaaaacacataaaaa 30287424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 30271314 - 30271576
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    ||||||||||||||||||| |||||||||||||| |  ||      |||||| ||||||||||| || || | ||||||||||||||| ||||||||||     
T  30271314 aaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttcttgttggatatttaattaaatgtatttcccaaagtggtttgtcttg 30271413  T
Q  103 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 202  Q
    |||||| ||||| || |  |||||||||||||| ||||||||||  |||||||| ||||||||||| ||| |||||||||| | |||||| |  | ||||    
T  30271414 tggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaacgtgcatatga 30271513  T
Q  203 tcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata 265  Q
    ||||  || || |||||||| |||||||||||||| || |||||||| |||||||||||||||    
T  30271514 tcttcaggcttcacctctacctttttccatttcattttgccatctttgtctctcacctatata 30271576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 30280875 - 30280613
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    ||||||||||||||||||| |||||||||||||| |  ||      |||||||||||||||||| || || | ||| ||||||||||| ||||||||||     
T  30280875 aaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttg 30280776  T
Q  103 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 202  Q
    |||||| ||||| || |  |||||||||||||| ||||||||||  |||||||| ||||||||||| ||| |||||||||| | ||||||||| | ||||    
T  30280775 tggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaaccttcatatga 30280676  T
Q  203 tcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata 265  Q
    ||||  || ||  |||||| |||||||||  |||| || ||||||| ||||||||||||||||    
T  30280675 tcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata 30280613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 30304381 - 30304643
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    ||||||||||||||||||| |||||||||||||| |  ||      |||||||||||||||||| || || | ||| ||||||||||| ||||||||||     
T  30304381 aaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttg 30304480  T
Q  103 tggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatga 202  Q
    |||||| ||||| || |  |||||||||||||| ||||||||||  |||||||| ||||||||||| ||| |||||||||| | ||||||||| | ||||    
T  30304481 tggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaaccttcatatga 30304580  T
Q  203 tcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata 265  Q
    ||||  || ||  |||||| |||||||||  |||| || ||||||| ||||||||||||||||    
T  30304581 tcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata 30304643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 30048618 - 30048723
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||     
T  30048618 aaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttg 30048717  T
Q  103 tggtgt 108  Q
    ||||||    
T  30048718 tggtgt 30048723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 30062959 - 30063064
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||     
T  30062959 aaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttg 30063058  T
Q  103 tggtgt 108  Q
    ||||||    
T  30063059 tggtgt 30063064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 30228757 - 30228850
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt 96  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| |||||    
T  30228757 aaccatcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt 30228850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 30032372 - 30032483
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttt 102  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||  ||||| |||||||||| ||||||| ||| ||||||||||| ||||| ||||     
T  30032372 aaccgtcaccaagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttg 30032471  T
Q  103 tggtgtcctttc 114  Q
    |||||| |||||    
T  30032472 tggtgttctttc 30032483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 30220307 - 30220209
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctt 101  Q
    ||||||||||||||||||| |||||||||||||| |  ||      |||||||||||||||||| || || | ||| ||||||||||||||||| ||||    
T  30220307 aaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatctt 30220209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 79592 - 79679
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaag 90  Q
    ||||||| ||||||||||||||||||||||||| || |||   ||| |||||  |||||||||| || |||| |||||| ||||||||    
T  79592 aaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgtatctcccaaag 79679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 72528 - 72612
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttccca 87  Q
    ||||||| ||||||||||||||||||||||||| || |||   ||| |||||  |||||||||| || |||| ||| ||||||||    
T  72528 aaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaatttccca 72612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 2311417 - 2311381
Alignment:
Q  3 aaccatcaccaagtgcatgatgaagtttgaatattat 39  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  2311417 aaccatctccaagtgcatggtgaagtttgaatattat 2311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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