View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19794_low_10 (Length: 255)
Name: NF19794_low_10
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19794_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 39520837 - 39521054
Alignment:
| Q |
23 |
aggaagactaacctttgaatccaaatcatcgaagggaatttcactagattgttcaatcactttcattagttctagcccatttaaaaatgctttcggtaca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39520837 |
aggaagactaacctttgaatccaaatcatcgaagggaatttcactagattgttcaatcactttcattagttctagcccatttaaaaatgctttcggtaca |
39520936 |
T |
|
| Q |
123 |
aaatccgacacattaggttgtacggtaacattcagtttcccagaggcatcggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39520937 |
aaatccgacacattaggttgtacggtaacattcaggttcccagaggcatcggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttg |
39521036 |
T |
|
| Q |
223 |
tgtcattattgacattca |
240 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39521037 |
tgtcattattgacattca |
39521054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 39575536 - 39575696
Alignment:
| Q |
80 |
cactttcattagttctagcccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcagtttcccagaggcatcggattga |
179 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39575536 |
cactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccaacacattaggttgtacggtaaccttcagtttcccagaggcatcggattga |
39575635 |
T |
|
| Q |
180 |
accacaaaatcataataataaggcatctgtagtgacaaacttgtgtcattattgacattca |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39575636 |
accacaaaatcataataataaggcatttgtagtgacaaacttgtgtcattattgacattca |
39575696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 39580071 - 39580219
Alignment:
| Q |
73 |
gttcaatcactttcattagttctagcccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcagtttcccagaggcatc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| || |||||| |||| | | |||| ||| |
|
|
| T |
39580071 |
gttcaatcactttcattagttctagcccatttaaaaatgcattcggtacaaaatcggtcacattaggttttatggtaaccttcaataggctagagttatc |
39580170 |
T |
|
| Q |
173 |
ggattgaaccacaaaatcataataataaggcatctgtagtgacaaactt |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39580171 |
ggaacgaaccacaaaatcataataataaggcatctgtattgacaaactt |
39580219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 39510579 - 39510676
Alignment:
| Q |
23 |
aggaagactaacctttgaatccaaatcatcgaagggaatttcactagattgttcaatcactttcattagttctagcccatttaaaaatgctttcggta |
120 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39510579 |
aggaagactaaccttcgaatccatatcatccgggggaatttcactagattgttcaatcacttccattagttctagcccatttaaaaatgcattcggta |
39510676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 39510725 - 39510799
Alignment:
| Q |
160 |
tcccagaggcatcggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtcattattga |
234 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
39510725 |
tcccagagccatcggattgaaccacgaaatcataataataaggcatctgtattgacaggctagtgtcattattga |
39510799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 39524486 - 39524529
Alignment:
| Q |
178 |
gaaccacaaaatcataataataaggcatctgtagtgacaaactt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39524486 |
gaaccacaaaatcataataataaggcatctgtagtgacaaactt |
39524529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 39524376 - 39524421
Alignment:
| Q |
74 |
ttcaatcactttcattagttctagcccatttaaaaatgctttcggt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
39524376 |
ttcaatcactttcattagttctagcccgtttaaaaaagcattcggt |
39524421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University