View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19794_low_2 (Length: 443)

Name: NF19794_low_2
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19794_low_2
NF19794_low_2
[»] chr7 (1 HSPs)
chr7 (18-443)||(27010351-27010769)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 27010351 - 27010769
Alignment:
Q  18 atcgcaaataggagacttttaaatgctcgtgtccgtcatcaacatctagtaagctcctttgactaaaaacttgctaccaagtatattaatatttctgaaa 117  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||      |||| ||    
T  27010351 atcgcaaataggagacttttaaatgcttgtgttcgtcatcaacatctagtaagctcctttgactaaaaagttaccaccaagtatatt------tctgcaa 27010444  T
Q  118 gtgcgtttaattttgttctcttggaaaataagattatcaacatacaaaaaatactctctaactgactcttcttcacattgaaacaacatacgcatgcaac 217  Q
    |||| |||||||||||| ||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  27010445 gtgcatttaattttgttttcttgaaaaataagattatcgacatacaaaaaacactctgtaactgactcttcttcgcattgaaacaacatacgcatgcaac 27010544  T
Q  218 tccacataaacccgccccc-tcttcaccattcaacaccaaattagcaacaatgacccnnnnnnnnatgaatagtcaaaccgtataatctactaaattaat 316  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  27010545 tccacataaacccgcccccctcttcaccattcaacaccaaattagcaacaatgaccctttttt--atgaatagtcaaaccgtataatctactaaattaat 27010642  T
Q  317 cccttaacccaaggatcatgcgagacaatgagttcctctaataaccaatcattttttctattttgttaaaaccaattaacttggtcattgtggtactcat 416  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27010643 cccttaatccaaggatcatgcgagacaatgagttcctctcataaccaatcattttttctattttgttaaaaccaattaacttggtcattgtggtactcat 27010742  T
Q  417 gccctactatttaaaatatctctccac 443  Q
    |||||||||||||||||||||||||||    
T  27010743 gccctactatttaaaatatctctccac 27010769  T

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