View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19794_low_3 (Length: 436)

Name: NF19794_low_3
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19794_low_3
NF19794_low_3
[»] scaffold0284 (2 HSPs)
scaffold0284 (9-329)||(2292-2612)
scaffold0284 (369-411)||(2708-2750)
[»] scaffold0114 (2 HSPs)
scaffold0114 (13-329)||(34952-35268)
scaffold0114 (358-411)||(34808-34860)
[»] chr8 (20 HSPs)
chr8 (11-329)||(36754494-36754812)
chr8 (9-214)||(41528465-41528669)
chr8 (120-316)||(1249150-1249347)
chr8 (128-326)||(7680874-7681073)
chr8 (123-326)||(33590138-33590340)
chr8 (126-294)||(41303046-41303216)
chr8 (171-244)||(21602122-21602195)
chr8 (163-246)||(6393861-6393944)
chr8 (328-411)||(41528704-41528786)
chr8 (174-251)||(33508621-33508698)
chr8 (178-261)||(26018683-26018766)
chr8 (203-261)||(21600521-21600579)
chr8 (130-242)||(42844877-42844990)
chr8 (126-256)||(7603934-7604065)
chr8 (336-411)||(36754888-36754962)
chr8 (153-251)||(4493015-4493113)
chr8 (216-262)||(42659935-42659981)
chr8 (9-66)||(43216918-43216975)
chr8 (153-229)||(4971606-4971681)
chr8 (143-251)||(44362593-44362701)
[»] scaffold0211 (2 HSPs)
scaffold0211 (9-324)||(19909-20224)
scaffold0211 (328-411)||(20301-20383)
[»] chr4 (41 HSPs)
chr4 (9-329)||(6552448-6552768)
chr4 (9-329)||(312622-312952)
chr4 (13-280)||(6552897-6553164)
chr4 (137-318)||(38932689-38932870)
chr4 (96-318)||(48827963-48828185)
chr4 (178-326)||(47097347-47097495)
chr4 (135-329)||(26499322-26499519)
chr4 (126-270)||(38080856-38081001)
chr4 (126-328)||(51150881-51151082)
chr4 (126-259)||(13834368-13834502)
chr4 (126-318)||(45615656-45615850)
chr4 (216-318)||(7616903-7617005)
chr4 (128-293)||(56095063-56095228)
chr4 (164-256)||(11839848-11839940)
chr4 (126-256)||(8170895-8171026)
chr4 (126-251)||(17381489-17381615)
chr4 (328-411)||(312471-312552)
chr4 (126-293)||(32934038-32934205)
chr4 (171-248)||(8755906-8755983)
chr4 (153-262)||(31903320-31903429)
chr4 (126-246)||(46804961-46805081)
chr4 (163-256)||(48973337-48973430)
chr4 (137-256)||(39331100-39331219)
chr4 (137-191)||(13834508-13834563)
chr4 (126-192)||(46804796-46804863)
chr4 (178-248)||(4161825-4161895)
chr4 (328-410)||(6552296-6552376)
chr4 (121-210)||(7616782-7616872)
chr4 (135-241)||(1758349-1758454)
chr4 (141-251)||(7912534-7912645)
chr4 (126-248)||(46805794-46805917)
chr4 (174-256)||(24806664-24806746)
chr4 (135-191)||(45615652-45615709)
chr4 (216-251)||(36409659-36409694)
chr4 (216-251)||(36423825-36423860)
chr4 (197-251)||(9297464-9297518)
chr4 (162-256)||(55132345-55132439)
chr4 (126-190)||(35255463-35255528)
chr4 (130-242)||(46433529-46433642)
chr4 (37-89)||(6561023-6561075)
chr4 (139-190)||(56095201-56095253)
[»] chr5 (21 HSPs)
chr5 (9-329)||(9023279-9023599)
chr5 (123-318)||(27769810-27770004)
chr5 (328-411)||(9023124-9023206)
chr5 (123-318)||(28903664-28903860)
chr5 (123-318)||(28940059-28940255)
chr5 (127-251)||(8206232-8206357)
chr5 (128-264)||(11497952-11498089)
chr5 (128-291)||(11505281-11505445)
chr5 (128-291)||(11512675-11512839)
chr5 (128-291)||(11520051-11520215)
chr5 (128-291)||(11527459-11527623)
chr5 (178-256)||(26675098-26675175)
chr5 (178-256)||(26946706-26946783)
chr5 (130-249)||(917099-917219)
chr5 (128-263)||(11534893-11535029)
chr5 (126-248)||(23159070-23159193)
chr5 (141-193)||(14461769-14461822)
chr5 (180-256)||(7313980-7314056)
chr5 (209-256)||(14460086-14460133)
chr5 (153-256)||(27001185-27001288)
chr5 (197-250)||(296412-296465)
[»] chr2 (16 HSPs)
chr2 (9-329)||(31967293-31967613)
chr2 (96-326)||(41746338-41746568)
chr2 (126-251)||(40124305-40124431)
chr2 (163-318)||(7165643-7165798)
chr2 (91-272)||(9470617-9470797)
chr2 (179-318)||(17742516-17742654)
chr2 (96-193)||(23077824-23077921)
chr2 (163-248)||(33260990-33261075)
chr2 (179-251)||(15301526-15301598)
chr2 (165-251)||(6788301-6788387)
chr2 (126-192)||(7165744-7165811)
chr2 (48-87)||(36727631-36727670)
chr2 (265-318)||(9471792-9471845)
chr2 (216-256)||(12676513-12676553)
chr2 (203-251)||(15816894-15816942)
chr2 (34-74)||(36720129-36720169)
[»] chr1 (21 HSPs)
chr1 (21-329)||(49880091-49880400)
chr1 (9-303)||(45919675-45919969)
chr1 (120-326)||(9890556-9890758)
chr1 (101-318)||(40872562-40872776)
chr1 (135-326)||(27463771-27463963)
chr1 (182-329)||(31738287-31738433)
chr1 (123-318)||(16658111-16658307)
chr1 (135-270)||(47921876-47922011)
chr1 (165-318)||(8069009-8069161)
chr1 (174-318)||(52361954-52362098)
chr1 (123-192)||(51849552-51849622)
chr1 (197-256)||(6541117-6541176)
chr1 (209-249)||(33747858-33747898)
chr1 (216-256)||(34826996-34827036)
chr1 (126-192)||(19464256-19464323)
chr1 (178-256)||(36144984-36145062)
chr1 (178-251)||(5529809-5529882)
chr1 (328-385)||(49879921-49879977)
chr1 (171-239)||(33747356-33747424)
chr1 (203-251)||(38267350-38267398)
chr1 (163-251)||(50155714-50155802)
[»] chr3 (20 HSPs)
chr3 (9-329)||(50239800-50240103)
chr3 (91-318)||(7672391-7672614)
chr3 (96-324)||(43838486-43838725)
chr3 (123-251)||(30006165-30006293)
chr3 (121-256)||(23195656-23195792)
chr3 (328-411)||(50239649-50239731)
chr3 (162-245)||(14984484-14984567)
chr3 (162-251)||(21568379-21568468)
chr3 (185-256)||(30843640-30843711)
chr3 (126-192)||(22235228-22235295)
chr3 (205-243)||(3941666-3941704)
chr3 (178-256)||(34979110-34979188)
chr3 (178-256)||(46008619-46008697)
chr3 (203-251)||(26499839-26499887)
chr3 (182-244)||(12832219-12832281)
chr3 (208-257)||(37852904-37852953)
chr3 (216-293)||(41897973-41898049)
chr3 (203-251)||(14194862-14194910)
chr3 (203-251)||(39336722-39336770)
chr3 (198-254)||(53705888-53705944)
[»] chr6 (15 HSPs)
chr6 (94-326)||(6524890-6525116)
chr6 (101-326)||(21237203-21237428)
chr6 (96-316)||(26293425-26293648)
chr6 (126-234)||(20565728-20565837)
chr6 (135-291)||(17848727-17848884)
chr6 (136-251)||(9307403-9307518)
chr6 (122-189)||(14549246-14549313)
chr6 (172-256)||(31142004-31142088)
chr6 (177-248)||(21021035-21021106)
chr6 (126-251)||(10067660-10067786)
chr6 (182-256)||(16431591-16431665)
chr6 (163-261)||(25085014-25085112)
chr6 (124-175)||(12291646-12291698)
chr6 (213-256)||(29927657-29927700)
chr6 (137-251)||(31315222-31315336)
[»] scaffold0252 (1 HSPs)
scaffold0252 (96-324)||(17102-17327)
[»] chr7 (21 HSPs)
chr7 (135-318)||(8929505-8929689)
chr7 (135-326)||(25689001-25689190)
chr7 (178-291)||(5197982-5198095)
chr7 (126-318)||(27080797-27080989)
chr7 (126-318)||(27197312-27197504)
chr7 (153-251)||(32996306-32996404)
chr7 (126-293)||(18942778-18942947)
chr7 (178-251)||(5362338-5362411)
chr7 (179-261)||(8062786-8062868)
chr7 (126-251)||(34703670-34703795)
chr7 (153-256)||(40355004-40355107)
chr7 (135-257)||(40077598-40077720)
chr7 (96-251)||(30839724-30839886)
chr7 (203-250)||(1344462-1344509)
chr7 (200-251)||(3116911-3116962)
chr7 (126-318)||(38838507-38838698)
chr7 (171-251)||(39608402-39608482)
chr7 (33-87)||(2929478-2929532)
chr7 (126-191)||(5358248-5358314)
chr7 (259-304)||(5362312-5362357)
chr7 (163-256)||(12927652-12927745)
[»] scaffold0216 (1 HSPs)
scaffold0216 (37-89)||(29157-29209)
[»] scaffold0045 (1 HSPs)
scaffold0045 (177-248)||(20628-20699)
[»] scaffold0687 (1 HSPs)
scaffold0687 (126-256)||(1618-1749)
[»] scaffold0074 (1 HSPs)
scaffold0074 (37-87)||(32751-32801)
[»] scaffold0191 (1 HSPs)
scaffold0191 (9-66)||(11645-11702)


Alignment Details
Target: scaffold0284 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 2292 - 2612
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  2292 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggacagatctagacattg 2391  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  2392 gatacatgtgaggctaaaatagtccatcaatctattaaaattttaaattgtctccgattgtacacttcattagtcaaaatagtccctaacattcaaatac 2491  T
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  2492 ttcattgatattgtcatattagtccttcaatatacttatttattgtcacttcagggattattatgactaacaaagtacaaaatcatggattattttagaa 2591  T
Q  309 gtttaatacagtgagagatta 329  Q
     ||||||||| ||||||||||    
T  2592 ttttaatacactgagagatta 2612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 2708 - 2750
Alignment:
Q  369 acatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  2708 acatagatccgcccctgatttcatacaaagtgaaatttttact 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 35268 - 34952
Alignment:
Q  13 catcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattggata 112  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  35268 catcatccaaaatcttagtgtattaggtatatcgatcatctaacttatatgtttcttaacatttacttttgcatccagggacaaatctagacattggata 35169  T
Q  113 catgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttca 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35168 catgtgaggctaaaatagtccatcaatgtattaaaattttaaattgtctctggttgtacacttcattagtcaaaatagtccctaacattcaaatacttca 35069  T
Q  213 ttgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagttt 312  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  35068 ttgatattgtcatattagtccttcaatatacttatttattatcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaatttt 34969  T
Q  313 aatacagtgagagatta 329  Q
    |||||| ||||||||||    
T  34968 aatacactgagagatta 34952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 34860 - 34808
Alignment:
Q  358 catagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  34860 catagccct-aacatagatccgcccctgatttcatacaaagtgaaacttttact 34808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 36754494 - 36754812
Alignment:
Q  11 atcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattgga 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  36754494 atcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggatagatctagacattgga 36754593  T
Q  111 tacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatactt 210  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||||||||||||||||    
T  36754594 tacatgtgaggctaagatagtccatcaatgtattaaaattttaaattgtctctgattgtatagttcattagtcaaaatggtccctaacattcaaatactt 36754693  T
Q  211 cattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagt 310  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  36754694 cattgatattgtcatattagtccttcaatatacttatttattgtcacttcatggactattatgactaacaaagtacaaaatcatgaattattttagaatt 36754793  T
Q  311 ttaatacagtgagagatta 329  Q
    |||||||| ||||||||||    
T  36754794 ttaatacactgagagatta 36754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 41528465 - 41528669
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  41528465 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggacatatctagacattg 41528564  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  41528565 gatacatgtgaggctaaaatagtacatcaatgtattaaaattttaaattgtctctgattgtacactt-attagtcaaaatagtccctaacattcaaatac 41528663  T
Q  209 ttcatt 214  Q
    ||||||    
T  41528664 ttcatt 41528669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 316
Target Start/End: Complemental strand, 1249347 - 1249150
Alignment:
Q  120 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatat 219  Q
    ||||||||| |||  | ||||||||||||||| ||||||||  |||||||||| ||| |||||||||||| || |||||||| ||||| ||  || |||     
T  1249347 ggctaaaatggtctcttaatgtattaaaatttcaaattgtcattgattgtacatttcgttagtcaaaataatctataacattaaaatattttgttaatac 1249248  T
Q  220 tgtcatattagtccttcaatatacttatttatcgtcac-ttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaata 316  Q
    |||||||| ||| |||||||||| ||| |||| ||||| |||| |||||||| ||||||||||||  |||||||||||| |||||||||| |||||||    
T  1249247 tgtcatatcagtacttcaatatatttacttattgtcactttcaaggactattttgactaacaaagagcaaaatcatgaactattttagaattttaata 1249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 326
Target Start/End: Complemental strand, 7681073 - 7680874
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||||| || ||| ||||||||||| |||| ||||||| ||||| ||| || ||||||||||     
T  7681073 tagtccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaatcgtccctaacattaaaataattcgttaatattgtcatc 7680974  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacagtgagaga 326  Q
    |||||  |||||||| |||| |||| |||| |||| |||||||||||| ||||||||||||||||||  || ||||||  || ||||||| | |||||||    
T  7680973 ttagtatttcaatatccttacttattgtcatttcaaggactattatgagtaacaaagtacaaaatcagaaactatttttaaattttaatatattgagaga 7680874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 33590340 - 33590138
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgt 222  Q
    ||||||||||  | ||||||| |||||| ||||||||| | |||| |||| ||  |||||||||||| ||| ||||||| ||||||||| || |||||||    
T  33590340 taaaatagtcttttaatgtatcaaaattataaattgtc-cagattatacattttgttagtcaaaataatccctaacattaaaatacttcgttaatattgt 33590242  T
Q  223 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacagtga 322  Q
    |||||   | |||||||||| ||| |||| ||||||| |  ||||||  ||||||||||||| |||||||||||| ||||||| || ||||||||| |||    
T  33590241 catatcgattcttcaatataattaattattgtcacttaaaagactatattgactaacaaagtgcaaaatcatgaactattttacaattttaatacattga 33590142  T
Q  323 gaga 326  Q
    ||||    
T  33590141 gaga 33590138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 294
Target Start/End: Complemental strand, 41303216 - 41303046
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtcc--ataacattcaaatacttcattgatattgt 222  Q
    |||||||| ||||||||| ||||||||||| | |||  ||||| | |||||   |||||||||||||||  |||||||| ||||| ||  || |||||||    
T  41303216 aatagtccctcaatgtatcaaaattttaaaatagtcattgattatgcactttgctagtcaaaatagtcccgataacattaaaataatttgttaatattgt 41303117  T
Q  223 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcat 294  Q
    |||||||||| || |||||||||| |||| |||||| ||||| ||||| ||||||||||||| |||||||||    
T  41303116 catattagtcttttaatatacttaattattgtcactccaggg-ctattttgactaacaaagtgcaaaatcat 41303046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 21602195 - 21602122
Alignment:
Q  171 cacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatact 244  Q
    |||||||||| |||||||||||| | ||||| ||||| ||| || |||||||||||||||||||||||||||||    
T  21602195 cacttcattaatcaaaatagtccctgacattaaaataattcgttaatattgtcatattagtccttcaatatact 21602122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 6393861 - 6393944
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatactta 246  Q
    ||||||| ||||| ||||||||||||||| | ||||||| ||||| ||| || ||||| |||||||||| ||||||||||||||    
T  6393861 tgattgtgcactttattagtcaaaatagttcctaacattaaaatagttctttaatattatcatattagttcttcaatatactta 6393944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 411
Target Start/End: Original strand, 41528704 - 41528786
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    ||||||||||||||| |||||  |||| | ||||| ||| ||||||||||||||  ||||||||||| ||||||||||||||||    
T  41528704 tagggaagggcatgtagggctttagccccacatagtcct-aacatagatccgccattgatttcatacaaagtgaaatttttact 41528786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 33508698 - 33508621
Alignment:
Q  174 ttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    ||||||| |||||||| ||  | ||||| |||||||||||| ||||| || |||||||||||||||||||||| ||||    
T  33508698 ttcattaatcaaaataatctctgacattaaaatacttcattaatattatcgtattagtccttcaatatacttacttat 33508621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 26018766 - 26018683
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttca 261  Q
    ||||||||||||||| || ||||| ||||| ||| || | ||||| ||||||||| ||||||||||||| |||| |||| ||||    
T  26018766 ttagtcaaaatagtctatgacattaaaatagttcgttaacattgttatattagtcattcaatatacttacttattgtcatttca 26018683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 21600521 - 21600579
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttca 261  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||| |||| |||| ||||    
T  21600521 aaatatttcattaatattgtcatatttgtccttcaatatacttacttattgtcatttca 21600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 42844877 - 42844990
Alignment:
Q  130 gtccatcaatgtattaaaatttta-aattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatatt 228  Q
    |||| ||||||||| ||||||||  ||| | || ||||||||||||| ||||||||||||||| | | | ||| ||||  |||||| ||||||||||||     
T  42844877 gtccttcaatgtatcaaaattttcgaataggctttgattgtacacttaattagtcaaaatagttcctgatattaaaatgtttcattaatattgtcatatc 42844976  T
Q  229 agtccttcaatata 242  Q
    | || |||||||||    
T  42844977 aatcattcaatata 42844990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 7603934 - 7604065
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||  ||||||||| ||||||||||| |  | | ||||||| |||||| || ||||||||||||  ||| ||| ||||   ||||| |||||||||    
T  7603934 aatagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtca 7604033  T
Q  225 tattagtccttcaatatacttatttatcgtca 256  Q
    ||||| || ||||||||| ||| |||| ||||    
T  7604034 tattaatctttcaatatatttacttattgtca 7604065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 411
Target Start/End: Original strand, 36754888 - 36754962
Alignment:
Q  336 ggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    |||||||||||||  |||| | ||||| ||| |||||||||||| || ||||||||||| |||| |||||||||||    
T  36754888 ggcatgtggggctttagccccacatagtcct-aacatagatccgtccttgatttcatacaaagtaaaatttttact 36754962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 4493015 - 4493113
Alignment:
Q  153 aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||| ||||||||||||  | || |||| |||||||||||  | ||||| ||||||||  || ||||||   |||||||||||||||||| ||||||||    
T  4493015 aaatagtctctgattgtcaattttattaatcaaaatagtcattgacattaaaatactttgttaatattgctttattagtccttcaatatatttatttat 4493113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 42659935 - 42659981
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttatcgtcacttcag 262  Q
    ||||||||||||||||| ||||||||||||| |||| ||||| ||||    
T  42659935 atattgtcatattagtcattcaatatacttacttattgtcacatcag 42659981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 43216918 - 43216975
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 66  Q
    ||||||||| | |||||||||  | |||| |||||| |||||||||||||||||||||    
T  43216918 acatcatcacccaaaatcttaaagcattatgtatattgatcatctcacttatatgttt 43216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 4971681 - 4971606
Alignment:
Q  153 aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatatta 229  Q
    |||| ||| ||||||||||||||  ||||||||||| |||| | | ||| ||||| |||||| ||||||||||||||    
T  4971681 aaatagtcactgattgtacacttg-ttagtcaaaatcgtccttgatattaaaatatttcattaatattgtcatatta 4971606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 44362701 - 44362593
Alignment:
Q  143 ttaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatata 242  Q
    ||||| ||| |||| || |||||||||  | ||| ||||||||||||||| ||||  || ||||| |||||| ||| || |||||||||| || | ||||    
T  44362701 ttaaattttaaaatagtttctgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaatactgacatattagtcatttattata 44362602  T
Q  243 cttatttat 251  Q
    |||| ||||    
T  44362601 cttacttat 44362593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 19909 - 20224
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||    
T  19909 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcattcagggacaaatctagacattg 20008  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  20009 gatacatgtgaggttaagatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatac 20108  T
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20109 ttcattgatattgtcatattagtccttcaatatacttatttattgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaa 20208  T
Q  309 gtttaatacagtgaga 324  Q
     ||||||||| |||||    
T  20209 ttttaatacactgaga 20224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 411
Target Start/End: Original strand, 20301 - 20383
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    |||||||||||||||||||||  |||| | ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  20301 tagggaagggcatgtggggcttgagccccacatagccct-aacatagatccgcccctgatttcatataaagtgaaatttttact 20383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 6552768 - 6552448
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| ||||||||    
T  6552768 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatacgttttttaacatttacttttgcatccagggacagatctagacattg 6552669  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6552668 gatacatgtgaggctaaaatagtccatcaatgtattaaagatttaaattgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatac 6552569  T
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaa 308  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  6552568 ttcattgatattgtcacattagtccttcaatatacttatttattgtcacttcaaggcctattatgactaacaaagtacaaaatcatggattattttagaa 6552469  T
Q  309 gtttaatacagtgagagatta 329  Q
     ||||||||| ||||||||||    
T  6552468 ttttaatacactgagagatta 6552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 312952 - 312622
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagaca--- 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       
T  312952 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacagacagatcgagacagat 312853  T
Q  106 -------ttggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataac 198  Q
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  312852 cgagacattggatacatgtgaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgcacacttcattagtcaaaatagtccctaac 312753  T
Q  199 attcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||    
T  312752 attcaaatacttcattgatattgtcatattagtccttcaatatacttatttattgtcacttcagggattattatgactaataaagtacaaaatcatgtat 312653  T
Q  299 tattttagaagtttaatacagtgagagatta 329  Q
    ||||||| || ||||||||| ||||||||||    
T  312652 tattttataattttaatacactgagagatta 312622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 6553164 - 6552897
Alignment:
Q  13 catcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattggata 112  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  6553164 catcatccaaaatcttagtctattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatctagggacagatctagacattggata 6553065  T
Q  113 catgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttca 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6553064 catgtgaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttca 6552965  T
Q  213 ttgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaaca 280  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  6552964 ttgatattgtctcattagtccttcaatatacttatttattgtcacttcaaggcctattatgactaaca 6552897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 137 - 318
Target Start/End: Complemental strand, 38932870 - 38932689
Alignment:
Q  137 aatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttc 236  Q
    ||||||| |||||||||||||||||  ||||||||| ||  |||||||||||||||  ||||||| ||||| |||||| |||||||||||||||||||||    
T  38932870 aatgtatcaaaattttaaattgtcttcgattgtacattttgttagtcaaaatagtctctaacattaaaatatttcattaatattgtcatattagtccttc 38932771  T
Q  237 aatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| | ||||||| || |||||||||    
T  38932770 aatatacttatttattgtcacttcagagactattatgactaacaatgtacaaaatcatggactattttaaaattttaataca 38932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 48828185 - 48827963
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccat 195  Q
    |||| ||||||| |||| ||||  ||||||||||| || |||||||||  ||||||| ||||| || |||||||| ||||| ||||| |||||||||| |    
T  48828185 gatctagacatttgatatatgtggggctaaaatagaccctcaatgtatcgaaattttcaattgcctttgattgtatacttcgttagttaaaatagtccct 48828086  T
Q  196 aacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatg 295  Q
    || ||  |||||| ||||| ||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||||||||| |    
T  48828085 aatataaaaatacgtcattaatattgtcatattaacccttcaatatacttacttattgtcacttcagggactattacgactaataaagtacaaaatcagg 48827986  T
Q  296 aattattttagaagtttaataca 318  Q
     | ||||||| || || ||||||    
T  48827985 gactattttaaaatttaaataca 48827963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 47097495 - 47097347
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgacta 277  Q
    |||||||||||||||  ||||| | |||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| || || ||||  |||||||     
T  47097495 ttagtcaaaatagtctttaacactaaaatactttattaatattgtcatattagtcctttaatatacttatttattgtcagtttagagactgctatgactt 47097396  T
Q  278 acaaagtacaaaatcatgaattattttagaagtttaatacagtgagaga 326  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||||    
T  47097395 acaaagtacaaaatcatgaattattttaaaattttaatacattgagaga 47097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 26499519 - 26499322
Alignment:
Q  135 tcaatgtattaaaattttaaattgtctctgattg---tacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagt 231  Q
    ||||||||| |||||| ||||||||||| || |    || ||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  26499519 tcaatgtatcaaaattgtaaattgtctcagactactatagacttcgttagtcaaaatagtccgtaacattaaaatacttcattaatattgtcatattagt 26499420  T
Q  232 ccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacagtgagagatta 329  Q
    | ||||||||||||| | ||  ||| |||| |  ||||| |||||||||||||| ||||||||  |||||||||||| ||||||||| | ||||||||    
T  26499419 cattcaatatacttactaattatcatttcatgagctattttgactaacaaagtataaaatcatttattattttagaattttaatacattaagagatta 26499322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 270
Target Start/End: Complemental strand, 38081001 - 38080856
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||||||||||||| ||||||||||| | ||||  |||| | || ||| ||||||||||||||   ||||||| ||||||||  || |||| ||||    
T  38081001 aatagtccatcaatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaatagtttgtaacattaaaatactttgttaatatagtca 38080902  T
Q  225 tattagtccttcaatatacttatttatcgtcacttcagggactatt 270  Q
    ||||||| ||||||||||||||||||| |||||||| | |||||||    
T  38080901 tattagtacttcaatatacttatttattgtcacttccgagactatt 38080856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 126 - 328
Target Start/End: Original strand, 51150881 - 51151082
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattgtctc-tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    ||||| |||||||||||| ||||||||||| |   || ||||||| || ||  ||||| |||||||||| ||||||| ||||| ||  || |||||||||    
T  51150881 aatagaccatcaatgtatcaaaattttaaaatagttcgtgattgtgcattttgttagtgaaaatagtccctaacattaaaatattttgttaatattgtca 51150980  T
Q  225 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacagtgaga 324  Q
    ||||||| |||||||||||||| |||| ||||||| |||||||||| |||| |||| |||  |||||||   | ||||||| || ||||||||| |||||    
T  51150981 tattagtacttcaatatacttacttattgtcactt-agggactattttgaccaacagagt-gaaaatcagagactattttaaaattttaatacattgaga 51151078  T
Q  325 gatt 328  Q
    ||||    
T  51151079 gatt 51151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 13834368 - 13834502
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||| ||||| ||| ||||||||||| | |||  ||||||| |||||  |||||||||||||||  ||||||| ||||| ||  || |||||||||    
T  13834368 aatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtca 13834467  T
Q  225 tattagtccttcaatatacttatttatcgtcactt 259  Q
    |||||||||||||||||||||| |||| |||||||    
T  13834468 tattagtccttcaatatacttacttattgtcactt 13834502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 318
Target Start/End: Complemental strand, 45615850 - 45615656
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattgtctctgattgta--cacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtc 223  Q
    |||||||| ||||||| |  ||||||||||| |||  |||||||   |||||  |||||||||||||||  ||| ||| ||||| ||  || ||||||||    
T  45615850 aatagtccctcaatgtttcgaaattttaaatagtccttgattgtgtgcactttgttagtcaaaatagtctctaatattaaaataatttgttaatattgtc 45615751  T
Q  224 atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    || |||||||||||||||||||| |||| |||||||||   |||||| ||||||| ||||| ||||||||   | ||||||| || |||||||||    
T  45615750 attttagtccttcaatatacttacttattgtcacttcaaaaactattttgactaataaagtgcaaaatcagagactattttaaaattttaataca 45615656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 7616903 - 7617005
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaat 315  Q
    ||||| ||||||||||| |||||||||||||||||| |||| || | |||||||| ||||||||||||| ||||||||  || ||||||| || ||||||    
T  7616903 atattatcatattagtcattcaatatacttatttattgtcatttaatggactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaat 7617002  T
Q  316 aca 318  Q
    |||    
T  7617003 aca 7617005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 293
Target Start/End: Original strand, 56095063 - 56095228
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||| ||||||| ||||| ||  || |||||||||||    
T  56095063 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcata 56095162  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 293  Q
    |||||| || |||||||||| |||| |||||||||  | ||||| ||||||||||||| ||||||||    
T  56095163 ttagtcttttaatatacttacttattgtcacttca-agcctattttgactaacaaagtgcaaaatca 56095228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 11839848 - 11839940
Alignment:
Q  164 gattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||| ||| || |||||||||||||||| | ||||| ||||||||| || ||||||||||||||||||||||||| ||||| |||| ||||    
T  11839848 gattgtgcacctcgttagtcaaaatagtccttgacattaaaatacttcgttaatattgtcatattagtccttcaatacacttacttattgtca 11839940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 8171026 - 8170895
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||| ||||||||| ||||||| ||| | |||||||||| | || ||| |||||||||||| ||  ||| ||| ||||  |||||| |||||||||    
T  8171026 aatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtca 8170927  T
Q  225 tattagtccttcaatatacttatttatcgtca 256  Q
    ||||||| |||||||||||||| |||| ||||    
T  8170926 tattagtacttcaatatacttacttattgtca 8170895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 251
Target Start/End: Complemental strand, 17381615 - 17381489
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||| ||||||||| ||||||  ||| | ||| |||||||| |||||  ||| |||||||||||| | | ||| ||||| ||| || |||||||||    
T  17381615 aatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatagtccttgatattaaaatatttcgttaatattgtca 17381516  T
Q  225 tattagtccttcaatatacttatttat 251  Q
    |||||||||||||||||||||| ||||    
T  17381515 tattagtccttcaatatacttacttat 17381489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 312552 - 312471
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    |||||||||||||||||||||  |||| | |||||||  |||||||||||| ||||| ||||||||| ||||||||||||||||    
T  312552 tagggaagggcatgtggggctttagccccacatagcc--taacatagatccacccctcatttcatacaaagtgaaatttttact 312471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 293
Target Start/End: Complemental strand, 32934205 - 32934038
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||| ||||||||| ||||||||||| | || | ||||||| |||||   |||||||||||||   ||||||| ||||| ||  || |||||||||    
T  32934205 aatagtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatagtttctaacattaaaataatttgttaatattgtca 32934106  T
Q  225 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 293  Q
     ||||||| || |||||||||| || | ||||||||| || ||||| ||||||| ||||| ||||||||    
T  32934105 cattagtcttttaatatacttacttgttgtcacttcaagg-ctattttgactaataaagtgcaaaatca 32934038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 8755983 - 8755906
Alignment:
Q  171 cacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 248  Q
    |||||| ||| |||||||||||  ||||||| ||||||||| || |||||||||||||| ||||| ||||||||||||    
T  8755983 cacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcctttaatatacttatt 8755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 31903320 - 31903429
Alignment:
Q  153 aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatc 252  Q
    |||| ||| |||||||| |  |||| |||||||||| |||||| || || ||||| ||||||  ||||||||||| |||||||||||||||||| ||||     
T  31903320 aaatagtccctgattgtgcttttcagtagtcaaaattgtccatgacgttaaaataattcattagtattgtcatatcagtccttcaatatacttacttatt 31903419  T
Q  253 gtcacttcag 262  Q
    |||| |||||    
T  31903420 gtcatttcag 31903429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 46805081 - 46804961
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaa-ttgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||  ||||| ||||||||||||||| |||||||||||||| | |||| || ||||||||||||| | | ||| ||||| |||||| ||||| |||    
T  46805081 aatagtctttcaatatattaaaattttaaaattgtctctgattgtgc-cttcgttggtcaaaatagtccctgatattaaaatatttcattaatattatca 46804983  T
Q  225 tattagtccttcaatatactta 246  Q
    | | ||| ||||||||||||||    
T  46804982 tgtcagttcttcaatatactta 46804961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 48973430 - 48973337
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||| || ||||||| |||||||||| | | |  || |||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  48973430 tgattgtgcaattcattaatcaaaatagttcttgatgttaaaatgcttcattaatattgtcatattagtccttcaatatacttacttattgtca 48973337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 39331219 - 39331100
Alignment:
Q  137 aatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcctt 235  Q
    |||||||| |||||||||| | || | ||||||| |||||| || |||||| |||||||| | ||| |||| ||||||| ||||||| |||| |||| ||    
T  39331219 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagtccatgatattaaaatgcttcattaatattgttatatcagtcttt 39331121  T
Q  236 caatatacttatttatcgtca 256  Q
    |||||||||||||||| ||||    
T  39331120 caatatacttatttattgtca 39331100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 13834563 - 13834508
Alignment:
Q  137 aatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagt 191  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  13834563 aatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaatagt 13834508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 46804796 - 46804863
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtc 192  Q
    |||||||| ||||||||| ||||||||||| | ||||||||||||||||||  |||||||||||||||    
T  46804796 aatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtc 46804863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 4161895 - 4161825
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 248  Q
    ||||||||||||||| || | ||| ||||  |||||| |||||||||||||||| ||||||||||||||||    
T  4161895 ttagtcaaaatagtctatgatattaaaatgtttcattaatattgtcatattagttcttcaatatacttatt 4161825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 6552376 - 6552296
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttac 410  Q
    |||||||||||||||||||||  |||| | || ||||| |||||||||||||||| || |||||||| |||||||||||||||    
T  6552376 tagggaagggcatgtggggctttagccccacaaagccc-taacatagatccgcccatg-tttcatacaaagtgaaatttttac 6552296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 7616782 - 7616872
Alignment:
Q  121 gctaaaatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatactt 210  Q
    |||||||||||   ||| ||||||||||||||||||| |||||| |||||||| ||| |||||||||||| ||| |||||||  |||||||    
T  7616782 gctaaaatagtttttcagtgtattaaaattttaaatttgtctctaattgtacatttcgttagtcaaaataatccttaacattagaatactt 7616872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 1758349 - 1758454
Alignment:
Q  135 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcc 233  Q
    ||||||||| ||||||| ||| | || ||| |||||  ||||| |||||||||||||||| | ||||| ||||||||| || ||||||||  ||||||||    
T  1758349 tcaatgtatcaaaatttcaaaatagtttcttattgtgtacttcgttagtcaaaatagtccttgacattaaaatacttcgttaatattgtc--attagtcc 1758446  T
Q  234 ttcaatat 241  Q
    ||||||||    
T  1758447 ttcaatat 1758454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 7912534 - 7912645
Alignment:
Q  141 tattaaaatttt-aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaat 239  Q
    |||| ||||||| |||| |||||| ||||| ||||||| ||||||||||||||| | | ||| |||| ||||||| |||||| || || | || ||||||    
T  7912534 tattgaaattttgaaatagtctctaattgtgcacttcactagtcaaaatagtccctcatattaaaatgcttcattaatattgacacatcaatcattcaat 7912633  T
Q  240 atacttatttat 251  Q
    ||||||| ||||    
T  7912634 atacttacttat 7912645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 46805794 - 46805917
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||| | ||||||||||||||||||||| | |||  |||||||||||||| |||||||||||| |   | ||||| ||||| ||  || || || |||    
T  46805794 aatagtacctcaatgtattaaaattttaaagtagtcattgattgtacacttcgttagtcaaaataatatttgacattaaaatattttgttaatgttatca 46805893  T
Q  225 tattagtccttcaatatacttatt 248  Q
    ||| ||| ||||||||||||||||    
T  46805894 tatcagtacttcaatatacttatt 46805917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 24806746 - 24806664
Alignment:
Q  174 ttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||||||||||  ||||||| ||||| ||  || ||||||||||| ||||  ||||||||||||| |||| ||||    
T  24806746 ttcattagtcaaaatagtctctaacattaaaataatttgttaatattgtcatagtagtttttcaatatacttacttattgtca 24806664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 45615652 - 45615709
Alignment:
Q  135 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagt 191  Q
    ||||||||||||||||||||| | |||||||||| | ||||| |||||||||||||||    
T  45615652 tcaatgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagt 45615709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 36409694 - 36409659
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttat 251  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36409694 atattgtcatattagtccttcaatatacttacttat 36409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 36423860 - 36423825
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttat 251  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36423860 atattgtcatattagtccttcaatatacttacttat 36423825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 9297464 - 9297518
Alignment:
Q  197 acattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    ||||| ||||||||  || ||||||||||||||||| || |||||||||||||||    
T  9297464 acattaaaatactttgttaatattgtcatattagtcattaaatatacttatttat 9297518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 55132345 - 55132439
Alignment:
Q  162 ctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||| | |||||| ||||||||||| |||  | ||||| ||||||||| || |||||| ||||||| ||||| ||| || |||||||| ||||    
T  55132345 ctgattatgcacttcgttagtcaaaatggtcatttacattaaaatacttcgttaatattgccatattaatcctttaatgtaattatttattgtca 55132439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 35255528 - 35255463
Alignment:
Q  126 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaaatag 190  Q
    |||||||  |||||||||||||||||| |||| || ||||||| | ||||| ||||||||||||||    
T  35255528 aatagtctctcaatgtattaaaattttaaaatagtatctgattttgcactttattagtcaaaatag 35255463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 46433642 - 46433529
Alignment:
Q  130 gtccatcaatgtattaaaatttta-aattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatatt 228  Q
    |||| ||||||||| ||||||||  ||| | || |||||||| |||| ||||||||||||||| | | | ||| ||||  |||||| |||||| |||||     
T  46433642 gtccttcaatgtatcaaaattttcgaataggctttgattgtatacttaattagtcaaaatagttcctgatattaaaatgtttcattaatattggcatatc 46433543  T
Q  229 agtccttcaatata 242  Q
    | ||||||||||||    
T  46433542 aatccttcaatata 46433529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 6561075 - 6561023
Alignment:
Q  37 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 89  Q
    |||||||| | ||||||||||||||||||  ||||||| |||||||| |||||    
T  6561075 aggtatattggtcatctcacttatatgttgtttaacatctacttttgtatcca 6561023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 56095253 - 56095201
Alignment:
Q  139 tgtattaaaattttaaa-ttgtctctgattgtacacttcattagtcaaaatag 190  Q
    ||||||||||||||||| |||||||||||| | |||||  |||||||||||||    
T  56095253 tgtattaaaattttaaaattgtctctgattttgcactttgttagtcaaaatag 56095201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 9023599 - 9023279
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||  ||||||||    
T  9023599 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttgtatgtttcttaacatttacttttgcatccagggacaaatatagacattg 9023500  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  9023499 gatacatgtgaggctaagatagtctatcaatgtattaaaattttaaattgtctctgattgtacactttattagtcaaaatagtccctaacattcaaatac 9023400  T
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  9023399 ttcattgatattgtcatattagtccttcaatatacttatttattgtcacttcagggactattataactaacaaagtacaaaatcatggattattttagaa 9023300  T
Q  309 gtttaatacagtgagagatta 329  Q
    || ||||||| || |||||||    
T  9023299 gtgtaatacactgtgagatta 9023279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 123 - 318
Target Start/End: Original strand, 27769810 - 27770004
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgt 222  Q
    ||||||||||| ||||||||| |||| |||||||||| | ||||| |||||||| |||||||| ||||||  ||||||| ||||| || ||| |||||||    
T  27769810 taaaatagtccctcaatgtataaaaaatttaaattgtttttgatt-tacacttcgttagtcaagatagtcactaacattaaaatattttattaatattgt 27769908  T
Q  223 catattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||||||   |||||||||||||| ||||  ||||||||  ||||||||||||||| |||||||||||||||| | |||||||||| |||||||||    
T  27769909 catattaactcttcaatatacttacttattttcacttcaaagactattatgactaaaaaagtacaaaatcatggactattttagaattttaataca 27770004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 9023206 - 9023124
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  9023206 tagggaagggcatgtggggctaaagccccacatagccct-aacatagatccgcccctgatttcatacaaagtgaaatttttact 9023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 318
Target Start/End: Original strand, 28903664 - 28903860
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgt 222  Q
    ||||||||||| | ||| ||| ||||  ||||||||||||| |||||||| |||  | |||||||||||   ||||||| |||||||||||| ||||  |    
T  28903664 taaaatagtccctaaatatataaaaaaattaaattgtctctaattgtacatttcgatggtcaaaatagtttctaacattaaaatacttcattaatatatt 28903763  T
Q  223 catattagtccttca-atatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    ||||| |  ||||   ||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||| | | |||||||||| |||||||||    
T  28903764 catatcaacccttttgatatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaataca 28903860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 318
Target Start/End: Original strand, 28940059 - 28940255
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgt 222  Q
    ||||||||||| | ||| ||| ||||  ||||||||||||| |||||||| |||  | |||||||||||   ||||||| |||||||||||| ||||  |    
T  28940059 taaaatagtccctaaatatataaaaaaattaaattgtctctaattgtacatttcgatggtcaaaatagtttctaacattaaaatacttcattaatatatt 28940158  T
Q  223 catattagtccttca-atatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    ||||| |  ||||   ||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||| | | |||||||||| |||||||||    
T  28940159 catatcaacccttttgatatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaataca 28940255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 8206357 - 8206232
Alignment:
Q  127 atagtccatcaatgtattaaaatttta-aattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcat 225  Q
    ||||||| | |||||||  |||||||| ||| ||| |||| ||| ||||||||||||||||||||||| | |||   ||||| |||||| ||||||||||    
T  8206357 atagtcctttaatgtatcgaaattttataatagtccctgaatgtgcacttcattagtcaaaatagtccttgacaacaaaataattcattaatattgtcat 8206258  T
Q  226 attagtccttcaatatacttatttat 251  Q
    |||| |||||||||||||||| ||||    
T  8206257 attaatccttcaatatacttacttat 8206232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 11498089 - 11497952
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||| ||||||| ||||| ||  || |||||||||||    
T  11498089 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcata 11497990  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcaggg 264  Q
    ||| || || |||||||||| |||| ||||||||||||    
T  11497989 ttaatcttttaatatacttacttattgtcacttcaggg 11497952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 11505445 - 11505281
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||| ||||||| ||||| ||  || |||||||| ||    
T  11505445 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11505346  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 291  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || ||||||    
T  11505345 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaat 11505281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 11512839 - 11512675
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||| ||||||| ||||| ||  || |||||||| ||    
T  11512839 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11512740  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 291  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || ||||||    
T  11512739 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaat 11512675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 11520215 - 11520051
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||| ||||||| ||||| ||  || |||||||| ||    
T  11520215 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11520116  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 291  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || ||||||    
T  11520115 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaat 11520051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 11527623 - 11527459
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||| ||||||| ||||| ||  || |||||||| ||    
T  11527623 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtccctaacattaaaataatttgttaatattgtcgta 11527524  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 291  Q
    ||| || || |||||||||| |||| ||||||||||||  ||||  ||||||||| || ||||||    
T  11527523 ttaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaat 11527459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 26675098 - 26675175
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||| | |||||  || ||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26675098 ttagtcaaaataattcataatgttaaaatatttcattaatattgtcatat-agtccttcaatatacttatttattgtca 26675175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 26946706 - 26946783
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||| | |||||  || ||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26946706 ttagtcaaaataattcataatgttaaaatatttcattaatattgtcatat-agtccttcaatatacttatttattgtca 26946783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 917219 - 917099
Alignment:
Q  130 gtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatatt 228  Q
    |||| |||||||||  |||||||||| | |||| ||||||||||||| |||  |||||||||||  | ||| | ||||| ||  || |||||||||||||    
T  917219 gtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagtctctcacaataaaatattttgttaatattgtcatatt 917120  T
Q  229 agtccttcaatatacttattt 249  Q
    |||| ||||||||| ||||||    
T  917119 agtcattcaatatatttattt 917099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 11535029 - 11534893
Alignment:
Q  128 tagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcata 226  Q
    |||||| ||||||||| ||||||||||| | || | ||||| | |||||   ||||||| ||||||  ||||||| ||||| ||  || |||||||||||    
T  11535029 tagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtcaacatagtctctaacattaaaataatttgttaatattgtcata 11534930  T
Q  227 ttagtccttcaatatacttatttatcgtcacttcagg 263  Q
    ||| || || |||||||||| |||| |||||||||||    
T  11534929 ttaatcttttaatatacttacttattgtcacttcagg 11534893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 23159070 - 23159193
Alignment:
Q  126 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||||||||||||| |||||||| |||| || | ||||||| || ||| ||||| |||||||||| | |  || ||||  |||||| |||||  ||    
T  23159070 aatagtccatcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatattaaca 23159169  T
Q  225 tattagtccttcaatatacttatt 248  Q
    |||| |||||||||| ||||||||    
T  23159170 tatttgtccttcaatttacttatt 23159193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 14461822 - 14461769
Alignment:
Q  141 tattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtcc 193  Q
    |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  14461822 tattcaaattttaaaatagtctctgattgtacacttcgttagtcaaaatagtcc 14461769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 7313980 - 7314056
Alignment:
Q  180 agtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||||| | | ||| ||||| ||| || ||||||||||||| |||| | ||||||||||||||| ||||    
T  7313980 agtcaaaatagtccctcatatttaaatatttcgttaatattgtcatattggtcccttaatatacttatttattgtca 7314056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 14460133 - 14460086
Alignment:
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||| ||||||||||||||||||||||||||||| ||| |||| ||||    
T  14460133 ttcactgatattgtcatattagtccttcaatatatttacttattgtca 14460086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 27001185 - 27001288
Alignment:
Q  153 aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatc 252  Q
    |||| |||| ||||||| || ||  |||||||||||||||  | |  || |||||||||||| ||||||||||||||  || |||||||||||| ||||     
T  27001185 aaatagtctatgattgtgcaatttgttagtcaaaatagtctttgatgttaaaatacttcattaatattgtcatattaccccgtcaatatacttacttatt 27001284  T
Q  253 gtca 256  Q
    ||||    
T  27001285 gtca 27001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 296412 - 296465
Alignment:
Q  197 acattcaaatacttcattgatattgtcatattagtccttcaatatacttattta 250  Q
    ||||| ||||| |||||| |||||||| ||||||  ||||||||||||||||||    
T  296412 acattaaaatatttcattaatattgtcgtattagatcttcaatatacttattta 296465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 31967293 - 31967613
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  31967293 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggacaaatctagacattg 31967392  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| |||||||| |||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31967393 gatacatgtgaggctaaagtagtccatcaatttataaaaaatttaagttgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatac 31967492  T
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaa 308  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  31967493 ttcattgatattgtcatattagtccttcaatatacttttttactgtcacttcagagactattatgactaacaaagtacaaaatcatggattcttttagaa 31967592  T
Q  309 gtttaatacagtgagagatta 329  Q
     ||||||||| ||||||||||    
T  31967593 ttttaatacactgagagatta 31967613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 96 - 326
Target Start/End: Original strand, 41746338 - 41746568
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccat 195  Q
    |||| ||||||| |||| ||||  ||||||||||| || | ||| ||| |||||||||||||||||||||||||| ||||| ||| |||||||||||  |    
T  41746338 gatctagacatttgatatatgtggggctaaaatagacccttaatatatcaaaattttaaattgtctctgattgtatacttcgttattcaaaatagtctct 41746437  T
Q  196 aacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatg 295  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  41746438 aacattaaaatacttcattaatattgtcatattagcccttcaatatacttatttattgtcacttcagggactattatgtctaaaaaagtacaaaatcatg 41746537  T
Q  296 aattattttagaagtttaatacagtgagaga 326  Q
    || |||||||||| || |||||| |||||||    
T  41746538 aactattttagaatttaaatacattgagaga 41746568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 40124305 - 40124431
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||||| |||||||  |||||||||| || ||||||||||| |||| | |||||||||||||||||||||||| || ||||||||| |||||||||    
T  40124305 aatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaatagtccataacattaaagtacttcattaatattgtca 40124404  T
Q  225 tattagtccttcaatatacttatttat 251  Q
    |||||| ||||||||||||||| ||||    
T  40124405 tattagcccttcaatatacttacttat 40124431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 7165643 - 7165798
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcag 262  Q
    ||||||| ||||| ||||||||||||||||| ||||||| ||||| ||  || ||||| ||||||||||| ||||||||||||| |||| |||||||||     
T  7165643 tgattgtgcactttattagtcaaaatagtccttaacattaaaataatttgttaatattttcatattagtctttcaatatacttacttattgtcacttcaa 7165742  T
Q  263 ggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
     ||||||| | ||||| ||||| ||||||||   | ||||||| || |||||||||    
T  7165743 agactattttaactaataaagtgcaaaatcagagactattttaaaattttaataca 7165798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 272
Target Start/End: Original strand, 9470617 - 9470797
Alignment:
Q  91 ggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatag 190  Q
    |||| |||| ||||||| |||||||||  || ||||||||||  | ||| ||| ||||||||||||||||||| |||||| ||||  ||||| ||||||     
T  9470617 ggacggatctagacatttgatacatgtggggttaaaatagtcactaaatatatcaaaattttaaattgtctctaattgtatactttgttagttaaaataa 9470716  T
Q  191 tccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattat 272  Q
    ||  ||| ||| |||||||||||| || || |||| ||||  |||||||||||||| ||||  |||||| | ||||||||||    
T  9470717 tctctaaaattaaaatacttcattaat-ttatcatgttagctcttcaatatacttacttattatcacttaacggactattat 9470797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 318
Target Start/End: Complemental strand, 17742654 - 17742516
Alignment:
Q  179 tagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaa 278  Q
    |||||| |||||| | ||||||| ||||| ||  || ||||||||||||||||| || |||||||||| |||| |||||||||||| ||||| | |||||    
T  17742654 tagtcacaatagtgcctaacatttaaataatttgttaatattgtcatattagtcttttaatatacttacttattgtcacttcaggg-ctattttaactaa 17742556  T
Q  279 caaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||||| ||||||||   | ||||||| || |||||||||    
T  17742555 caaagtgcaaaatcagagactattttaaaattttaataca 17742516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 23077824 - 23077921
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtcc 193  Q
    |||| |||||| ||||||||||  |||||||||||| | ||||||||| |||||||||| |||||| |||||||  ||||  ||||||||||||||||    
T  23077824 gatctagacatcggatacatgtggggctaaaatagttcctcaatgtatcaaaattttaagttgtctttgattgttgactttgttagtcaaaatagtcc 23077921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 33260990 - 33261075
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 248  Q
    |||||| ||||||| |||||||||||||||  | ||| | ||||| ||| ||||||||||||||||| | ||||||||||||||||    
T  33260990 tgattgaacacttcgttagtcaaaatagtctttgacagtaaaatatttcgttgatattgtcatattatttcttcaatatacttatt 33261075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 15301598 - 15301526
Alignment:
Q  179 tagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    ||||||||||||||  | ||||| ||||||||| || |||||||| ||||||| |||||||||||||| ||||    
T  15301598 tagtcaaaatagtctctgacattaaaatacttcgttaatattgtcttattagtacttcaatatacttacttat 15301526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 6788301 - 6788387
Alignment:
Q  165 attgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    ||||| || |||||||||||||||| || || ||||| ||||| ||  || ||||||||||| ||||| ||||||||||||| ||||    
T  6788301 attgtgcatttcattagtcaaaataatcaatgacattaaaataatttgttaatattgtcatactagtcattcaatatacttacttat 6788387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 7165811 - 7165744
Alignment:
Q  126 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaaatagtc 192  Q
    |||||||  |||||||||||||||||| |||| |||||||||| | ||||| |||||| |||||||||    
T  7165811 aatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagttaaaatagtc 7165744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 36727631 - 36727670
Alignment:
Q  48 tcatctcacttatatgtttcttaacatttacttttgcatc 87  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  36727631 tcatctcacatatatgtttcttaacatctacttttgcatc 36727670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 9471792 - 9471845
Alignment:
Q  265 actattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||||||||||||||||||||||||| ||   | |||||||||| |||||||||    
T  9471792 actattatgactaacaaagtacaaaaacaatgactattttagaattttaataca 9471845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 12676513 - 12676553
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||||||||| ||||||||||||| ||| ||||    
T  12676513 atattgtcatattagtccctcaatatacttatctattgtca 12676553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 15816894 - 15816942
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    ||||||||  || ||||||||||||||||||||||| ||||||| ||||    
T  15816894 aaatactttgttaatattgtcatattagtccttcaagatacttacttat 15816942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 36720169 - 36720129
Alignment:
Q  34 attaggtatatcgatcatctcacttatatgtttcttaacat 74  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  36720169 attaggtatatggatcatctcacttatatgttgctcaacat 36720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 21 - 329
Target Start/End: Complemental strand, 49880400 - 49880091
Alignment:
Q  21 aaaatcttagtgtattaggtatatcg--atcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattggatacatgtc 118  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||      
T  49880400 aaaatcttagtgtattaggtatatctttatcatctcacttatatgtttcttaacatttacttttgcatccagggacggatctagacattggatacatgcg 49880301  T
Q  119 aggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgata 218  Q
    || ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  49880300 agactaaaatagtccaccaatgtatttaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccctaacattaaaatacttcattgata 49880201  T
Q  219 ttgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  49880200 ttgtcatattagtctttcaatatacttacttattgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaa-tttaataca 49880102  T
Q  319 gtgagagatta 329  Q
     ||||||||||    
T  49880101 ctgagagatta 49880091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 45919675 - 45919969
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||    
T  45919675 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatatttcttaacatttacttttgcatccagggacggatctagacattg 45919774  T
Q  109 gatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatac 208  Q
    ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  45919775 gatacatgtgagactaaaatagtccaccaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaataatccctaacattaaaatac 45919874  T
Q  209 ttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattt 303  Q
    ||||||||||||||||||||   ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45919875 ttcattgatattgtcatattgacccttcaatatacttacttattgtcactttagggactattatgactaacaaagtacaaaatcatgaattattt 45919969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 120 - 326
Target Start/End: Original strand, 9890556 - 9890758
Alignment:
Q  120 ggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatat 219  Q
    ||||||||| |||  ||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||| |||||||  |||||||| || ||||    
T  9890556 ggctaaaatggtctttcaatgtattaaaattttaaattgtctttgattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatat 9890655  T
Q  220 tgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacag 319  Q
    |||||||||||||||||||||||||||||    |||| || |||||||||| ||||||||||||| |||||||||||  |||||||||| |||||||||     
T  9890656 tgtcatattagtccttcaatatacttatt----gtcatttaagggactattttgactaacaaagtgcaaaatcatgatctattttagaattttaatacat 9890751  T
Q  320 tgagaga 326  Q
    |||||||    
T  9890752 tgagaga 9890758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 318
Target Start/End: Original strand, 40872562 - 40872776
Alignment:
Q  101 agacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacat 200  Q
    ||||||| |||| |||| ||||||||||||||| | ||||||| ||||||||||||| | |   |||||||| ||| |||||||||||||| | | ||||    
T  40872562 agacatttgatatatgtgaggctaaaatagtcccttaatgtatcaaaattttaaatttttttaaattgtacaattcgttagtcaaaatagttcgttacat 40872661  T
Q  201 tcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaatta 300  Q
    | |||||||| ||| ||||||||||||||| |||  |||||||||| |||| ||||||||| ||||   |||||||||||||||||||||||| | | ||    
T  40872662 taaaatacttaattaatattgtcatattagccctataatatacttacttattgtcacttcaaggac---tatgactaacaaagtacaaaatcagggacta 40872758  T
Q  301 ttttagaagtttaataca 318  Q
    | ||| || |||||||||    
T  40872759 tattaaaattttaataca 40872776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 326
Target Start/End: Complemental strand, 27463963 - 27463771
Alignment:
Q  135 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcc 233  Q
    ||||||||| ||||||| ||| | ||||||| |||| |||||| |||| ||||||||| | |||| || ||||||||  || ||||||| |||||||||     
T  27463963 tcaatgtatcaaaatttcaaaatagtctctggttgtgcacttcgttagacaaaatagttcctaacgttaaaatactttgttaatattgttatattagtct 27463864  T
Q  234 ttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacagtgagaga 326  Q
    ||||||||||||| |||| |||| ||||  ||||||| ||||||||||||| |||||| |   | |||||||||| ||||||||| |||||||    
T  27463863 ttcaatatacttacttattgtcatttcaaagactattttgactaacaaagtgcaaaattagagactattttagaattttaatacattgagaga 27463771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 31738287 - 31738433
Alignment:
Q  182 tcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaa 281  Q
    |||||||||||| ||||||| ||| | |   || |||||||||||||| || || ||||||||||||||| ||||||||||| |||||| ||||||||||    
T  31738287 tcaaaatagtccctaacattaaaagaatatgttaatattgtcatattaatcatttaatatacttatttattgtcacttcagg-actattttgactaacaa 31738385  T
Q  282 agtacaaaatcatgaattattttagaagtttaatacagtgagagatta 329  Q
    ||||||||||||  |||||||||| || | ||||||| ||||||||||    
T  31738386 agtacaaaatcaaaaattattttaaaattctaatacattgagagatta 31738433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 318
Target Start/End: Original strand, 16658111 - 16658307
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgt 222  Q
    ||||||||||| | ||| ||| ||||  ||||||||||||| |||||||| |||  | |||||||||||   ||||||| |||||||||||| ||||  |    
T  16658111 taaaatagtccctaaatatataaaaaaattaaattgtctctaattgtacatttcgatggtcaaaatagtttctaacattaaaatacttcattaatatatt 16658210  T
Q  223 catattagtccttca-atatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    ||||| |  ||||   ||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||| | | |||||||||| |||||||||    
T  16658211 catatcaacccttttgatatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaataca 16658307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 47922011 - 47921876
Alignment:
Q  135 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcct 234  Q
    ||||||||| ||| ||||||||||| | |||||||||| |||||||||||||||| ||| |||||||   |||||||||| || || ||||||||  |||    
T  47922011 tcaatgtataaaatttttaaattgtttttgattgtacatttcattagtcaaaataatccctaacattatgatacttcattaatcttatcatattaaccct 47921912  T
Q  235 tcaatatacttatttatcgtcacttcagggactatt 270  Q
    |||||||||||| |||| |||| |||| ||||||||    
T  47921911 tcaatatacttacttattgtcagttcatggactatt 47921876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 8069161 - 8069009
Alignment:
Q  165 attgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcaggg 264  Q
    |||||||| ||| |||||||||||| ||| ||| ||| ||||| ||  || |||||||||||||| ||| |||||||||||| ||||  ||| || |||     
T  8069161 attgtacatttcgttagtcaaaataatccttaatattaaaatattttgttaatattgtcatattaatccatcaatatacttacttattatcatttaagga 8069062  T
Q  265 actattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    ||| || ||||||||||||| |||||||||||| |||||||||| |||||||||    
T  8069061 actttt-tgactaacaaagtgcaaaatcatgaactattttagaattttaataca 8069009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 318
Target Start/End: Complemental strand, 52362098 - 52361954
Alignment:
Q  174 ttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatg 273  Q
    |||||| ||||||||| ||  ||||||| ||||||||  || ||||| |||||||||| |||| ||||||||||||||  ||||||||  || |||| ||    
T  52362098 ttcattggtcaaaataatctttaacattaaaatactttgttaatattatcatattagttcttcgatatacttatttattatcacttcattgattattttg 52361999  T
Q  274 actaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    | ||| ||||| ||||||||   | ||||||| || |||||||||    
T  52361998 aataataaagtgcaaaatcagagactattttaaaattttaataca 52361954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 51849622 - 51849552
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtc 192  Q
    ||||||||||| | ||||||||||||||||||| | || | |||||||||||||| |||||||||||||||    
T  51849622 taaaatagtccctgaatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaaatagtc 51849552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 6541117 - 6541176
Alignment:
Q  197 acattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||||| |||| ||||    
T  6541117 acattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattgtca 6541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 33747898 - 33747858
Alignment:
Q  209 ttcattgatattgtcatattagtccttcaatatacttattt 249  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  33747898 ttcattaatattgtcatattaatccttcaatatacttattt 33747858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 34827036 - 34826996
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  34827036 atattgtcatattagtcattcaatatacttatttattgtca 34826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 19464256 - 19464323
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaaatagtc 192  Q
    |||||||| ||||||||| ||||||| ||| || |||||||||| ||||| | |||||||||||||||    
T  19464256 aatagtccttcaatgtatcaaaatttaaaaatggtctctgattgaacactccgttagtcaaaatagtc 19464323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 36145062 - 36144984
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||||||||| |  || ||||  || ||| ||||||||||||||||  ||||||||||||| |||| ||||    
T  36145062 ttagtcaaaatagtccatgatgttaaaatcttttattaatattgtcatattagtttttcaatatacttagttattgtca 36144984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 5529882 - 5529809
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    ||||||||||||||   | ||||| ||||||||| || |||||||| ||||||| ||| |||||||||| ||||    
T  5529882 ttagtcaaaatagtttctgacattaaaatacttcgttaatattgtcttattagtacttaaatatacttacttat 5529809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 49879977 - 49879921
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctg 385  Q
    |||||||| ||||||||||||  |||| | ||||||||| ||||||||||||||||||    
T  49879977 tagggaagagcatgtggggctttagccccacatagccct-aacatagatccgcccctg 49879921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 33747356 - 33747424
Alignment:
Q  171 cacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaat 239  Q
    |||||| |||||||||||||||  | | ||| |||| || |||| ||||||||||||||||| ||||||    
T  33747356 cacttcgttagtcaaaatagtctctgatattaaaatgctccattaatattgtcatattagtcgttcaat 33747424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 38267398 - 38267350
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||| ||||||| |||||||||||||| |||||||||||| ||| ||||    
T  38267398 aaatgcttcattaatattgtcatattaatccttcaatatatttacttat 38267350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 50155802 - 50155714
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||||||| |||||||||||||||||||  | | ||| ||||  |||||| |||||||| ||| | | |||||||| ||||| ||||    
T  50155802 tgattgtacaattcattagtcaaaatagtcactgatattaaaatgtttcattaatattgtcctatcaatgcttcaatacacttacttat 50155714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 50240103 - 50239800
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttct---taacatttacttttgcatccacggacagatcgagaca 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| | ||||||||| |||||    
T  50240103 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctaattaacatttacttttgcatcgagggacagatctagaca 50240004  T
Q  106 ttggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaa 205  Q
    |||| ||||||| |||||||||||||||||||||||                  |||||||||||||||| ||||||||||||||||||  |||||||||    
T  50240003 ttggctacatgtgaggctaaaatagtccatcaatgt------------------ctctgattgtacactttattagtcaaaatagtcca--acattcaaa 50239924  T
Q  206 tacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattatttta 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| |||||||||    
T  50239923 tacttaattgatattgtcatattagtccttcaatatacttatttattgtcacttcagggactattataactaacaaagtacataaacatggattatttta 50239824  T
Q  306 gaagtttaatacagtgagagatta 329  Q
    ||| ||||||||| ||||||||||    
T  50239823 gaattttaatacactgagagatta 50239800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 91 - 318
Target Start/End: Complemental strand, 7672614 - 7672391
Alignment:
Q  91 ggacagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatag 190  Q
    |||| |||| ||| ||| |||||||||  || ||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  7672614 ggacggatctagatatttgatacatgtatggttaaaatagttcatcaatgtattaaaattttaaattgtctctgattgtacattttgttagtcaaaatag 7672515  T
Q  191 tccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaa 290  Q
    ||  ||||||| |||||||||||  ||| |||||| ||||  ||||||||||| || |||| |||||||||  |||||||||||||||||||||||||||    
T  7672514 tctctaacattaaaatacttcatcaata-tgtcat-ttagctcttcaatatac-tacttattgtcacttca-tgactattatgactaacaaagtacaaaa 7672419  T
Q  291 tcatgaattattttagaagtttaataca 318  Q
    |||||||||||||||||| |||||||||    
T  7672418 tcatgaattattttagaattttaataca 7672391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 96 - 324
Target Start/End: Complemental strand, 43838725 - 43838486
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccat 195  Q
    |||||| ||||| |||||||||  |||||||||||| | ||||||||| ||||||||| ||||||||||||| ||||| || |||||||||||| ||       
T  43838725 gatcgaaacatttgatacatgtggggctaaaatagttcctcaatgtatcaaaattttacattgtctctgattctacacatcgttagtcaaaataatctcg 43838626  T
Q  196 aacattcaaatacttcattgatattgtc-----------atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagt 284  Q
    |||||| |||||||||||| ||||||||           ||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  43838625 aacattaaaatacttcattaatattgtccctcgttagtcatattagcccttcaatatacttacttattgtcacttcatggactattatgactaacaaagt 43838526  T
Q  285 acaaaatcatgaattattttagaagtttaatacagtgaga 324  Q
    |||||||||   | ||||||| || ||||||||| |||||    
T  43838525 acaaaatcaaagactattttaaaattttaatacattgaga 43838486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 30006165 - 30006293
Alignment:
Q  123 taaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgt 222  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||  | ||||||| ||||| |||||| ||||| |    
T  30006165 taaaatagtcccacaatgtattaaaattttaaattatctctgattgtacatttcgttagtcaaaatagctcttaacattaaaatatttcattaatattat 30006264  T
Q  223 catattagtccttcaatatacttatttat 251  Q
     ||||||   |||||||||||||||||||    
T  30006265 tatattatctcttcaatatacttatttat 30006293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 23195792 - 23195656
Alignment:
Q  121 gctaaaatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatat 219  Q
    |||| |||||||  ||||||||||||||||||||| |  | ||||||||| || |||||||||  |||||||| || ||||| || || ||| || ||||    
T  23195792 gctacaatagtctttcaatgtattaaaattttaaaataatttctgattgtgcatttcattagttcaaatagtctatgacattaaagtatttcgttaatat 23195693  T
Q  220 tgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||||||||| ||||||||||||| |||| ||||    
T  23195692 tgtcatattagtctttcaatatacttaattattgtca 23195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 50239731 - 50239649
Alignment:
Q  328 tagggaagggcatgtggggctaaagcctcgcatagcccttaacatagatccgcccctgatttcatactaagtgaaatttttact 411  Q
    |||||||||||||||||||||  |||||| ||||||||| |||||| |||| || |||||||||||| ||||||||||||||||    
T  50239731 tagggaagggcatgtggggctttagcctcacatagccct-aacatatatccaccgctgatttcatacaaagtgaaatttttact 50239649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 14984484 - 14984567
Alignment:
Q  162 ctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatactt 245  Q
    |||||||| |||||| |||||||||||||| | | ||||| ||||| ||| || |||||||||||||| |||||||||||||||    
T  14984484 ctgattgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaatattgtcatattaatccttcaatatactt 14984567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 21568379 - 21568468
Alignment:
Q  162 ctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||||| || ||||||||||||||||| |||| |  || |||| ||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  21568379 ctgattgtgcaattcattagtcaaaatagcccatgatgttaaaatgcttcattaatattctcatatttgtccttcaatatacttacttat 21568468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 30843640 - 30843711
Alignment:
Q  185 aaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||||||| |  || |||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  30843640 aaatagtccatgatgttaaaatgcttcattaatattgtcatattagtctttcaatatacttatttattgtca 30843711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 22235228 - 22235295
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtc 192  Q
    |||||||| | ||||||||||||||| ||| | ||| ||||||||||||||| |||||||||||||||    
T  22235228 aatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtc 22235295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 3941666 - 3941704
Alignment:
Q  205 atacttcattgatattgtcatattagtccttcaatatac 243  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3941666 atacttcattaatattgtcatattagtccttcaatatac 3941704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 34979188 - 34979110
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||||||  | ||||| ||||| ||| || ||||| ||||||||||| ||||||||||||| |||| ||||    
T  34979188 ttagtcaaaatagtctctcacattaaaatatttcgttaatattatcatattagtcattcaatatacttacttattgtca 34979110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 46008619 - 46008697
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||| |||||||||  ||||||| ||||| ||| || |||||||||||||| || || ||||||||||||||| ||||    
T  46008619 ttagttaaaatagtctttaacattaaaataattcgttaatattgtcatattaatcttttaatatacttatttattgtca 46008697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 26499839 - 26499887
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||||    
T  26499839 aaatacttcattaatattttcatatcagtcattcaatatacttatttat 26499887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 12832281 - 12832219
Alignment:
Q  182 tcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatact 244  Q
    |||||||||||  | | ||| |||| ||||||| |||||||||||| ||||||||||||||||    
T  12832281 tcaaaatagtctcttatattaaaatgcttcattaatattgtcatataagtccttcaatatact 12832219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 37852904 - 37852953
Alignment:
Q  208 cttcattgatattgtcatattagtccttcaatatacttatttatcgtcac 257  Q
    ||||||| ||| ||||||||||||| || ||||||||||||||| |||||    
T  37852904 cttcattaataatgtcatattagtcttttaatatacttatttattgtcac 37852953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 41897973 - 41898049
Alignment:
Q  216 atattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 293  Q
    ||||||||||||||||| || |||||| |||||| | ||||||| || | ||||| ||| ||||||||| ||||||||    
T  41897973 atattgtcatattagtcttttaatatatttatttgttgtcactttagag-ctattttgattaacaaagtgcaaaatca 41898049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 14194910 - 14194862
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||||||||| |||||||||||| |||| || |||||||||| ||||    
T  14194910 aaatacttcattaatattgtcatatcagtcatttaatatacttagttat 14194862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 39336770 - 39336722
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||| ||||    
T  39336770 aaatgcttcatttatattgacatattaatccttcaatatacttacttat 39336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 53705944 - 53705888
Alignment:
Q  198 cattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgt 254  Q
    |||| ||||||||  || ||||||||||||||||  ||||||||||||| |||||||    
T  53705944 cattaaaatactttgttaatattgtcatattagttattcaatatacttacttatcgt 53705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 6525116 - 6524890
Alignment:
Q  94 cagatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtcc 193  Q
    |||||| ||||||| |||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||    
T  6525116 cagatctagacatttgatacatgtgggactaaaatagtccatcaatgtatcaaaattttaaattgtctttgattatacacttcgtttgtcaaaatagtcc 6525017  T
Q  194 ataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 293  Q
     ||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||  |||||| |  |||||     || |||||||||||||||||    
T  6525016 gtaacattaaaatacttcattaatattgtcatattagtccttcaatatatttacttattctcacttta-tgacta-----acaaacaaagtacaaaatca 6524923  T
Q  294 tgaattattttagaagtttaatacagtgagaga 326  Q
     | | |||||||||| ||||||||| |||||||    
T  6524922 gggactattttagaattttaatacattgagaga 6524890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 101 - 326
Target Start/End: Complemental strand, 21237428 - 21237203
Alignment:
Q  101 agacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacat 200  Q
    |||||||  ||||||||  || |||||||||||   ||||||| |||||||||||||||||||||||||| | ||| ||||||||| || | | ||||||    
T  21237428 agacatttcatacatgtggggttaaaatagtcccataatgtatcaaaattttaaattgtctctgattgtatatttcgttagtcaaattaattcctaacat 21237329  T
Q  201 tcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaatta 300  Q
    | |||||||||||| | ||||||||||||| | ||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||| ||| | | ||    
T  21237328 taaaatacttcattaacattgtcatattagccgttcaatatacttagttattgtcactccagggactattatgactaataaagtacaaactcagggacta 21237229  T
Q  301 ttttagaagtttaatacagtgagaga 326  Q
    |||||||| ||||||||| |||||||    
T  21237228 ttttagaattttaatacattgagaga 21237203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 316
Target Start/End: Complemental strand, 26293648 - 26293425
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaata----gtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagt 191  Q
    |||| ||||||| |||||||||  ||||||||||    || | ||||||||| ||||||||||||||| | | ||| |||| |   ||||||||||||||    
T  26293648 gatctagacatttgatacatgtggggctaaaatatatagttcttcaatgtatcaaaattttaaattgttttttatt-tacattctgttagtcaaaatagt 26293550  T
Q  192 ccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 291  Q
    || ||||||| ||||||||  || ||||| ||||||||||| |||||||||| || |||| ||||||| |    ||||| ||||||||||||||||||||    
T  26293549 ccttaacattaaaatactttgttaatattatcatattagtcattcaatatacatacttattgtcactttaaatgctattttgactaacaaagtacaaaat 26293450  T
Q  292 catgaattattttagaagtttaata 316  Q
    |||| | |||||||||| |||||||    
T  26293449 catggactattttagaattttaata 26293425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 20565837 - 20565728
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    ||||||||||||||||||  || ||||||| | |||||||||||| ||||||  ||||||||||| ||||||||||| ||||| ||| || ||||| |||    
T  20565837 aatagtccatcaatgtatcgaatttttaaaatagtctctgattgtccacttcgctagtcaaaataatccataacattaaaatatttcgttaatattttca 20565738  T
Q  225 tattagtcct 234  Q
    ||||||||||    
T  20565737 tattagtcct 20565728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 291
Target Start/End: Complemental strand, 17848884 - 17848727
Alignment:
Q  135 tcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcc 233  Q
    ||||||||| ||||||||||| |  | || |||||| || ||| |||||||||||||||  ||||||| ||||||||| || |||||| ||||||||||     
T  17848884 tcaatgtatcaaaattttaaaataatttcagattgtgcatttcgttagtcaaaatagtctttaacattaaaatacttcgttaatattgacatattagtca 17848785  T
Q  234 ttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaat 291  Q
    ||  ||||||||| |||| ||||| || ||||||||| | ||||| ||| | ||||||    
T  17848784 tttgatatacttacttattgtcacatctgggactattttcactaataaaatgcaaaat 17848727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 9307518 - 9307403
Alignment:
Q  136 caatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcct 234  Q
    ||||||||| |||||||||| | ||| |||| ||| || |||||| |||||| |||||| | ||||| ||||| |||||| | |||||||||||||||||    
T  9307518 caatgtattgaaattttaaaatagtccctgaatgtgcatttcatttgtcaaa-tagtccctgacattaaaataattcattaacattgtcatattagtcct 9307420  T
Q  235 tcaatatacttatttat 251  Q
    |||||||||||| ||||    
T  9307419 tcaatatacttacttat 9307403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 14549313 - 14549246
Alignment:
Q  122 ctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaata 189  Q
    ||||||||||   ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  14549313 ctaaaatagtagctcaatgtattaaaatttcaaattctccctgattgtacacttcattagtcaaaata 14549246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 31142004 - 31142088
Alignment:
Q  172 acttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||||| |||| ||||||||| | ||| |||||||||||| |||||||||||| ||| |||||||||| ||| |||| ||||    
T  31142004 acttcattaatcaatatagtccatgatattaaaatacttcattaatattgtcatatcagtacttcaatatatttacttattgtca 31142088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 21021106 - 21021035
Alignment:
Q  177 attagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 248  Q
    ||||||||||||||||  ||||||| ||||| ||| ||  |||| |||||||||||||||||||||||||||    
T  21021106 attagtcaaaatagtcattaacattaaaatatttcgttattattatcatattagtccttcaatatacttatt 21021035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 251
Target Start/End: Complemental strand, 10067786 - 10067660
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||  |||||||||  |||||||||| | ||||||||||||  | ||  ||| |||||||||||  | ||||| ||||||||  || |||||||||    
T  10067786 aatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaatagtctctgacattaaaatactttgttaatattgtca 10067687  T
Q  225 tattagtccttcaatatacttatttat 251  Q
    |||||||| ||||||||||||| ||||    
T  10067686 tattagtcattcaatatacttacttat 10067660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 16431665 - 16431591
Alignment:
Q  182 tcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    |||||||||||  ||||||| ||||| |||| | ||||||||||||||||| ||||||||||||| |||| ||||    
T  16431665 tcaaaatagtctctaacattaaaataattcactaatattgtcatattagtcattcaatatacttacttattgtca 16431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 25085112 - 25085014
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttca 261  Q
    ||||||| |||||  |||||||||||||||  ||||||| ||||| ||  || |||||||||||||| || ||||||||||||| ||||  ||||||||    
T  25085112 tgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattattctttcaatatacttacttattttcacttca 25085014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 12291698 - 12291646
Alignment:
Q  124 aaaatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacactt 175  Q
    |||||||||| |||||||||||||||||| |||| |||| |||||||||||||    
T  12291698 aaaatagtccctcaatgtattaaaattttaaaatagtctttgattgtacactt 12291646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 29927700 - 29927657
Alignment:
Q  213 ttgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||    
T  29927700 ttgatattgtcatattagttcttcaataaacttatttattgtca 29927657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 31315336 - 31315222
Alignment:
Q  137 aatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcctt 235  Q
    ||||||||||||||||||| | |||| ||||||| ||||   ||||| ||||||| |  | ||||| ||||| ||| || |||||||||||||| |  ||    
T  31315336 aatgtattaaaattttaaaatagtctttgattgtgcactatgttagt-aaaatagactcttacattaaaatatttctttcatattgtcatattaatattt 31315238  T
Q  236 caatatacttatttat 251  Q
    ||||||||||||||||    
T  31315237 caatatacttatttat 31315222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 96 - 324
Target Start/End: Original strand, 17102 - 17327
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccat 195  Q
    |||| ||||||| |||||||||  ||| |||||||||  ||||||||| ||||||||||||||||| |||||||||||  | ||||||||||||||||||    
T  17102 gatctagacatttgatacatgtggggc-aaaatagtctttcaatgtatcaaaattttaaattgtctttgattgtacacagcgttagtcaaaatagtccat 17200  T
Q  196 aacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatg 295  Q
    |||||| ||||||||| || ||||||||||| ||||  |||||||||||||||||| |||||| ||||||| ||| ||||||  |  ||||||||||| |    
T  17201 aacattaaaatacttcgttaatattgtcatactagtatttcaatatacttatttattgtcactacagggaccattttgacta--atggtacaaaatcagg 17298  T
Q  296 aattattttagaagtttaatacagtgaga 324  Q
       |||||||||| ||||||||| |||||    
T  17299 gcctattttagaattttaatacattgaga 17327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 318
Target Start/End: Complemental strand, 8929689 - 8929505
Alignment:
Q  135 tcaatgtattaaaattttaaatt-gtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcc 233  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| ||| |||||||  |||||||| || ||||| ||| |||||||     
T  8929689 tcaatgtattaaaattttaaatttgtctcagattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatattatcaaattagtca 8929590  T
Q  234 ttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||| ||||||||||||  |||| || | |||||||| ||||||||||||| ||||||||  || ||||||| || |||||||||    
T  8929589 ttcagtatacttatttactgtcatttaatggactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaataca 8929505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 326
Target Start/End: Complemental strand, 25689190 - 25689001
Alignment:
Q  135 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcct 234  Q
    ||||| ||||||||||||||||| ||||||||| |||| | |||||||||||||| ||  |||||||  |||||||| || ||||||||||||||  | |    
T  25689190 tcaatatattaaaattttaaattatctctgattatacattccattagtcaaaataatcattaacattagaatacttcgttaatattgtcatatta--cat 25689093  T
Q  235 tcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaatacagtgagaga 326  Q
    | |||||||||| ||||  ||| || |||||||||| | ||||||||||| ||||||||  ||||||||||||| ||||||||| |||||||    
T  25689092 taaatatacttacttattatcatttaagggactattttaactaacaaagtgcaaaatcagaaattattttagaattttaatacattgagaga 25689001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 5198095 - 5197982
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttcagggactattatgacta 277  Q
    |||||||||||| ||  ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||  |||||||||||||| ||||||    
T  5198095 ttagtcaaaataatctctaacattaaaatacttcattaatattgtcatattagtctttcaatatacttatttattgttgcttcagggactattttgacta 5197996  T
Q  278 acaaagtacaaaat 291  Q
    ||||||| ||||||    
T  5197995 acaaagtgcaaaat 5197982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 318
Target Start/End: Original strand, 27080797 - 27080989
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcat 225  Q
    |||||| | ||||||||| ||| |||| ||  |||| ||||||| |||| |  ||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  27080797 aatagttcctcaatgtatcaaattttttaaaagtctttgattgtgcactacgctagtcaaaatagtccataacattaaaatacttctttaatattatcat 27080896  T
Q  226 attagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||| |||||||  ||||||| ||||  |||||||| |||||||| ||| |||||||||  |||||||     |||||||||| |||||||||    
T  27080897 attaatccttcagcatacttacttattatcacttcaaggactattttgaataacaaagtgaaaaatcaaagtctattttagaattttaataca 27080989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 318
Target Start/End: Complemental strand, 27197504 - 27197312
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcat 225  Q
    |||||| | ||||||||| ||| |||| ||  |||| ||||||| |||| |  ||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  27197504 aatagttcctcaatgtatcaaattttttaaaagtctttgattgtgcactacgctagtcaaaatagtccataacattaaaatacttctttaatattatcat 27197405  T
Q  226 attagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    |||| |||||||  ||||||| ||||  |||||||| |||||||| ||| |||||||||  |||||||     |||||||||| |||||||||    
T  27197404 attaatccttcagcatacttacttattatcacttcaaggactattttgaataacaaagtgaaaaatcaaagtctattttagaattttaataca 27197312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 32996306 - 32996404
Alignment:
Q  153 aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||| |||||||||||||||||||||| || |||||||||  ||| ||| || || ||  || ||||||||||||||||||||||||||||||||||||    
T  32996306 aaatagtctctgattgtacacttcatttgttaaaatagtctctaatattaaattaatttgttaatattgtcatattagtccttcaatatacttatttat 32996404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 293
Target Start/End: Original strand, 18942778 - 18942947
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattgtctctgat--tgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtc 223  Q
    |||||||  ||||||||| ||||||||||| | ||| ||||  ||| || ||| |||||| ||||||||  ||||||| |||||| || || ||||||||    
T  18942778 aatagtcactcaatgtatcaaaattttaaaatatctttgatcatgtgcatttcgttagtccaaatagtctctaacattaaaatacgtcgttaatattgtc 18942877  T
Q  224 atattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatca 293  Q
    |||||| || ||||||||||||| |||| |||| |||| ||| |||| ||| ||| ||| | ||||||||    
T  18942878 atattaatcattcaatatacttacttattgtcatttcatggattattttgattaataaaatgcaaaatca 18942947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 5362338 - 5362411
Alignment:
Q  178 ttagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||||||||||||| | | ||| ||||||||| || |||| |||||||||||||||||||||||||||||||    
T  5362338 ttagtcaaaatagtccctgatattaaaatacttcgttaatatggtcatattagtccttcaatatacttatttat 5362411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 8062786 - 8062868
Alignment:
Q  179 tagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtcacttca 261  Q
    ||||||||||||||||||||||| ||||| ||  || ||||||||||||||||| || |||||||||| | || |||||||||    
T  8062786 tagtcaaaatagtccataacattaaaataatttgttaatattgtcatattagtcttttaatatacttactcattgtcacttca 8062868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 34703670 - 34703795
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcat 225  Q
    |||||||||||||||||| ||| ||| |||| |||||| ||||| |||||| ||  |||||||||||  |||| || ||||| ||  |  ||||||||||    
T  34703670 aatagtccatcaatgtatcaaattttaaaatagtctctaattgttcacttcgttgatcaaaatagtctctaactttaaaatattttgtcaatattgtcat 34703769  T
Q  226 attagtccttcaatatacttatttat 251  Q
    ||||||| |||| |||||||| ||||    
T  34703770 attagtctttcagtatacttacttat 34703795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 40355107 - 40355004
Alignment:
Q  153 aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatc 252  Q
    |||| |||||||||||| ||||   |||||||||||||||  | ||||| ||| |||||||| |||||||||||||||| |||| |||||| || ||||     
T  40355107 aaatagtctctgattgtgcactatgttagtcaaaatagtcatttacattaaaacacttcattaatattgtcatattagttcttctatatacatacttatt 40355008  T
Q  253 gtca 256  Q
    ||||    
T  40355007 gtca 40355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 40077720 - 40077598
Alignment:
Q  135 tcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtcct 234  Q
    ||||||||||||| ||| ||||  | ||| |||||| | || |||| | |||||||||  ||||||| ||||| ||  || ||||||| |||||||| ||    
T  40077720 tcaatgtattaaattttaaaataatatctaattgtatattttattaattaaaatagtctctaacattaaaatattttgttaatattgttatattagtact 40077621  T
Q  235 tcaatatacttatttatcgtcac 257  Q
    |||||||| ||||||||||||||    
T  40077620 tcaatatatttatttatcgtcac 40077598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 30839724 - 30839886
Alignment:
Q  96 gatcgagacattggatacatgtcaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccat 195  Q
    |||| ||||||| ||||||| |  |||||||||||||| | ||||||| | |||||| |||||||  | |||||| | ||  ||| ||||||||||  ||    
T  30839724 gatctagacatttgatacatttggggctaaaatagtcccttaatgtatcagaatttttaattgtccttaattgtatattttgttaatcaaaatagtttat 30839823  T
Q  196 aacattcaaat-------acttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||| ||||       ||||| || | |||||||||||||||||||| |||||||||||||    
T  30839824 aacattaaaatttaaaatacttcgttaacattgtcatattagtccttcagtatacttatttat 30839886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 1344462 - 1344509
Alignment:
Q  203 aaatacttcattgatattgtcatattagtccttcaatatacttattta 250  Q
    |||||||||||| ||||||||| || ||||||||||||||||||||||    
T  1344462 aaatacttcattaatattgtcacatcagtccttcaatatacttattta 1344509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 3116911 - 3116962
Alignment:
Q  200 ttcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||| ||||    
T  3116911 ttcaaatatttcattaatattgtcatattagtctttcaatatacttacttat 3116962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 318
Target Start/End: Original strand, 38838507 - 38838698
Alignment:
Q  126 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    ||||||||||| |||| |||||||||| |||| |||  ||||||| |||||   ||||||||||||||| ||| ||| ||||| ||  || ||||| |||    
T  38838507 aatagtccatcgatgt-ttaaaattttaaaatagtccttgattgtgcacttttctagtcaaaatagtccctaatattaaaataatttgttaatattatca 38838605  T
Q  225 tattagtccttcaatatacttatttatcgtcacttcagggactattatgactaacaaagtacaaaatcatgaattattttagaagtttaataca 318  Q
    | |||||| || ||||||||||    | ||| |||||||| ||||| ||||||||||| | ||||||||   | ||||||| || |||||||||    
T  38838606 tgttagtcttttaatatacttaccagttgtctcttcaggg-ctattttgactaacaaaatgcaaaatcagagactattttaaaattttaataca 38838698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 39608402 - 39608482
Alignment:
Q  171 cacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttat 251  Q
    |||||| ||||| ||||||||   | ||||| |||||||| ||| ||||||||||||||||| |||| |||||||| ||||    
T  39608402 cacttcgttagttaaaatagttacttacattaaaatacttgattaatattgtcatattagtcattcagtatacttacttat 39608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 2929532 - 2929478
Alignment:
Q  33 tattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc 87  Q
    |||||||||| | | ||||||||| ||||||||||||||||| ||||||| ||||    
T  2929532 tattaggtatcttggtcatctcacatatatgtttcttaacatctacttttacatc 2929478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 5358248 - 5358314
Alignment:
Q  126 aatagtccatcaatgtattaaaatttt-aaattgtctctgattgtacacttcattagtcaaaatagt 191  Q
    |||||||| ||||||||| |||||||| |||| ||||||||||||  |||  |||||||||||||||    
T  5358248 aatagtccttcaatgtatcaaaattttaaaatagtctctgattgtgtactctattagtcaaaatagt 5358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 5362357 - 5362312
Alignment:
Q  259 tcagggactattatgactaacaaagtacaaaatcatgaattatttt 304  Q
    |||||||||||| ||||||||||| |||| ||||||||| ||||||    
T  5362357 tcagggactattttgactaacaaattacacaatcatgaactatttt 5362312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 12927652 - 12927745
Alignment:
Q  163 tgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatttatcgtca 256  Q
    ||||||| |||||  |||||||||||||||| | | ||| ||||| ||  || |||||||||| ||||| |||||||| ||||| |||| ||||    
T  12927652 tgattgtgcactttgttagtcaaaatagtccttcatattaaaatattttgttaatattgtcatgttagttcttcaatagacttagttattgtca 12927745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 29157 - 29209
Alignment:
Q  37 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 89  Q
    |||||||| ||||||||||||||||||||  ||||||| ||||||||||||||    
T  29157 aggtatattgatcatctcacttatatgttgtttaacatctacttttgcatcca 29209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 20628 - 20699
Alignment:
Q  177 attagtcaaaatagtccataacattcaaatacttcattgatattgtcatattagtccttcaatatacttatt 248  Q
    ||||||||||||||||  |   ||| ||||| |||||| ||||||||||||||||||||||||| |||||||    
T  20628 attagtcaaaatagtcattgttattaaaatatttcattaatattgtcatattagtccttcaatagacttatt 20699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 1618 - 1749
Alignment:
Q  126 aatagtccatcaatgtattaaaattttaaattg-tctctgattgtacacttcattagtcaaaatagtccataacattcaaatacttcattgatattgtca 224  Q
    |||||||  ||||||||| ||||||||||| |  | | ||||||| |||||| || ||||||||||||  ||| ||| ||||   ||||| |||||||||    
T  1618 aatagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtca 1717  T
Q  225 tattagtccttcaatatacttatttatcgtca 256  Q
    ||||| || ||||||||| ||| |||| ||||    
T  1718 tattaatctttcaatatatttacttattgtca 1749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 32801 - 32751
Alignment:
Q  37 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc 87  Q
    |||||||||  ||||||||||||||||||||||||||| | || |||||||    
T  32801 aggtatatcagtcatctcacttatatgtttcttaacatatgctcttgcatc 32751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 11702 - 11645
Alignment:
Q  9 acatcatcatcgaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 66  Q
    ||||||||| | |||| ||||  |||||| |||||| |||||||||||||||||||||    
T  11702 acatcatcacccaaaaccttaaagtattatgtatattgatcatctcacttatatgttt 11645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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