View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19794_low_4 (Length: 406)

Name: NF19794_low_4
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19794_low_4
NF19794_low_4
[»] chr7 (9 HSPs)
chr7 (94-245)||(13077530-13077681)
chr7 (95-245)||(13078591-13078741)
chr7 (247-395)||(6081265-6081413)
chr7 (247-395)||(6082472-6082620)
chr7 (15-94)||(30087872-30087951)
chr7 (247-359)||(17901159-17901273)
chr7 (253-360)||(27021363-27021468)
chr7 (49-94)||(30091852-30091898)
chr7 (298-359)||(30640722-30640782)
[»] chr3 (15 HSPs)
chr3 (94-245)||(39984803-39984954)
chr3 (94-245)||(39983742-39983893)
chr3 (247-395)||(54994673-54994821)
chr3 (247-395)||(45826153-45826301)
chr3 (95-244)||(41968188-41968336)
chr3 (247-395)||(7197780-7197928)
chr3 (249-395)||(592565-592711)
chr3 (247-395)||(48637539-48637687)
chr3 (247-395)||(2386293-2386449)
chr3 (247-357)||(40976891-40977001)
chr3 (274-395)||(51274450-51274571)
chr3 (99-205)||(14414236-14414340)
chr3 (299-359)||(16772790-16772848)
chr3 (298-358)||(49987228-49987286)
chr3 (329-357)||(54886899-54886927)
[»] chr2 (14 HSPs)
chr2 (94-245)||(14684556-14684707)
chr2 (94-245)||(21306412-21306563)
chr2 (95-245)||(14685617-14685767)
chr2 (95-245)||(30246458-30246608)
chr2 (94-245)||(40421380-40421531)
chr2 (95-245)||(4517243-4517393)
chr2 (95-245)||(21307469-21307619)
chr2 (95-245)||(40422439-40422589)
chr2 (247-395)||(33789943-33790094)
chr2 (247-395)||(12324917-12325068)
chr2 (321-374)||(18955452-18955505)
chr2 (298-358)||(13218743-13218802)
chr2 (330-374)||(3302449-3302494)
chr2 (298-354)||(42599698-42599753)
[»] chr1 (19 HSPs)
chr1 (94-245)||(8090040-8090191)
chr1 (247-395)||(8089720-8089868)
chr1 (95-245)||(27962617-27962767)
chr1 (95-245)||(48907301-48907451)
chr1 (247-395)||(8788534-8788682)
chr1 (247-395)||(10582764-10582912)
chr1 (247-395)||(10583970-10584118)
chr1 (247-395)||(49122192-49122340)
chr1 (115-244)||(172880-173009)
chr1 (247-395)||(49123326-49123474)
chr1 (274-395)||(49122003-49122124)
chr1 (248-362)||(23540880-23540998)
chr1 (275-386)||(23540999-23541112)
chr1 (247-359)||(3815222-3815335)
chr1 (287-351)||(19950378-19950442)
chr1 (247-359)||(36346541-36346653)
chr1 (309-358)||(17826222-17826271)
chr1 (296-358)||(30038108-30038170)
chr1 (317-359)||(40670604-40670646)
[»] chr6 (8 HSPs)
chr6 (247-395)||(18132989-18133137)
chr6 (247-395)||(21535772-21535920)
chr6 (247-395)||(18131783-18131931)
chr6 (247-395)||(21395592-21395740)
chr6 (248-352)||(7033339-7033443)
chr6 (100-226)||(28889748-28889874)
chr6 (247-359)||(4303040-4303152)
chr6 (247-353)||(16189671-16189779)
[»] chr8 (12 HSPs)
chr8 (95-245)||(45036163-45036313)
chr8 (95-245)||(6540576-6540728)
chr8 (95-245)||(13255565-13255714)
chr8 (247-395)||(40254469-40254615)
chr8 (250-358)||(21661182-21661290)
chr8 (247-374)||(2411062-2411187)
chr8 (247-321)||(26246969-26247043)
chr8 (296-358)||(5176597-5176658)
chr8 (296-354)||(26187541-26187599)
chr8 (274-374)||(13260936-13261037)
chr8 (325-357)||(19729212-19729244)
chr8 (299-359)||(43506411-43506470)
[»] chr4 (9 HSPs)
chr4 (94-244)||(54938828-54938978)
chr4 (247-395)||(11962094-11962242)
chr4 (95-215)||(54937788-54937908)
chr4 (247-380)||(3567045-3567178)
chr4 (331-395)||(45638746-45638810)
chr4 (299-362)||(27869371-27869434)
chr4 (262-304)||(45638710-45638752)
chr4 (296-358)||(32992387-32992448)
chr4 (296-346)||(36982313-36982362)
[»] scaffold0026 (2 HSPs)
scaffold0026 (247-395)||(80781-80929)
scaffold0026 (252-392)||(79588-79728)
[»] chr5 (11 HSPs)
chr5 (247-392)||(22950330-22950475)
chr5 (247-395)||(39701589-39701737)
chr5 (247-395)||(39702819-39702967)
chr5 (247-395)||(29526039-29526188)
chr5 (247-395)||(19934620-19934768)
chr5 (247-395)||(29527252-29527401)
chr5 (247-356)||(19139374-19139483)
chr5 (247-387)||(41050926-41051069)
chr5 (118-223)||(5033188-5033290)
chr5 (247-359)||(35144500-35144613)
chr5 (330-359)||(37473631-37473660)
[»] scaffold0011 (2 HSPs)
scaffold0011 (247-395)||(211667-211815)
scaffold0011 (247-395)||(205590-205738)
[»] scaffold0227 (2 HSPs)
scaffold0227 (247-395)||(11140-11288)
scaffold0227 (247-395)||(12288-12436)
[»] scaffold0018 (1 HSPs)
scaffold0018 (272-395)||(177889-178012)
[»] scaffold0063 (1 HSPs)
scaffold0063 (327-358)||(33903-33934)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 13077681 - 13077530
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13077681 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 13077582  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077581 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13077530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 13078741 - 13078591
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  13078741 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacggaataatattgcagaacttcgagggtctgcacctccctattgcca 13078642  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078641 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13078591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 6081413 - 6081265
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6081413 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6081314  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6081313 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 6081265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 6082620 - 6082472
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6082620 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6082521  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6082520 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 6082472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 30087951 - 30087872
Alignment:
Q  15 aatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtctgcttcggacttcaggtaact 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30087951 aatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtttgcttcggacttcaggtaact 30087872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 17901273 - 17901159
Alignment:
Q  247 gataggaactgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 344  Q
    ||||| ||||||||||||||  |||||| ||||||||| ||||||||| | ||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  17901273 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagattcccaagaaattcgagagtcttggtactctcccctccaagaattcgaga 17901174  T
Q  345 gcttggtctctccct 359  Q
    |||||||||||||||    
T  17901173 gcttggtctctccct 17901159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 360
Target Start/End: Complemental strand, 27021468 - 27021363
Alignment:
Q  253 aactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtc 352  Q
    ||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||||  ||| | |||||| |||| || |||||||||||||||||| ||    
T  27021468 aactgatatcaaaatattacttaatagtaatattacaatagaatcccaagaaattc--gagtcctggttccctcctcttcaagaattcgagagcttgatc 27021371  T
Q  353 tctcccta 360  Q
    ||||||||    
T  27021370 tctcccta 27021363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 30091898 - 30091852
Alignment:
Q  49 actctcagcttacta-tcgagttgtctgcttcggacttcaggtaact 94  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  30091898 actctcagcttactaatcgagctgtctgcttcggacttcaggtaact 30091852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 30640782 - 30640722
Alignment:
Q  298 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 359  Q
    ||||||||||  ||||||||||| |||| || ||||||||||| ||||||||||||||||||    
T  30640782 ccaagaaatttgagagccttggt-ctctgccttccaagaattcaagagcttggtctctccct 30640722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 39984803 - 39984954
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39984803 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39984902  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984903 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 39983742 - 39983893
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39983742 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39983841  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983842 taaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39983893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 54994821 - 54994673
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  54994821 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 54994722  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54994721 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 54994673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 45826153 - 45826301
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  45826153 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgagagc 45826252  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45826253 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 45826301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 41968188 - 41968336
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  41968188 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagat-aatattgcagaacttcgagggtctgcacctccctattgcca 41968286  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968287 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 41968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 7197928 - 7197780
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  7197928 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 7197829  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  7197828 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttctt 7197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 249 - 395
Target Start/End: Complemental strand, 592711 - 592565
Alignment:
Q  249 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagctt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  592711 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagggtcttggttctctcccctccaagaattcgagagctt 592612  T
Q  349 ggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||    
T  592611 gggctctccctaccaatcctttatcccaatccctgaatacctttctt 592565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 48637539 - 48637687
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  48637539 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagc 48637638  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  48637639 ttggtctctccctaccaatcctttatcccaatccctcaatacctctctt 48637687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 2386293 - 2386449
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagat--------tacaatataatcccaagaaattctagagccttggttctctcccctccaagaat 338  Q
    ||||| |||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  2386293 gatagaaactgatatcaaaatataaactaatagtaatatactaatattacaatataatcccaagaaattcgagagtctcggttctctcccctccaagaat 2386392  T
Q  339 tcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  2386393 tcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttctt 2386449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 40977001 - 40976891
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  40977001 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaaaaaattcgagagtcttggttctctcccctccaagaattcgagagc 40976902  T
Q  347 ttggtctctcc 357  Q
    |||||||||||    
T  40976901 ttggtctctcc 40976891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 51274571 - 51274450
Alignment:
Q  274 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 373  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  51274571 taatagtaatattacaatataatcccaagaaattcgagagtcttggttctcccccctccaagaatttgagagcttggtctctccctacctatcctttatc 51274472  T
Q  374 ccaatccctgaatacctttctt 395  Q
    ||||||||||||| || |||||    
T  51274471 ccaatccctgaatgcccttctt 51274450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 14414340 - 14414236
Alignment:
Q  99 agaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaat 198  Q
    ||||| ||||||||| |||||||  |||||||| |||||  |||| ||||||||  |||| |||||||||| ||||||||||| |||||| | |||||||    
T  14414340 agaaaccaactgatatagaagaaggaaataggggaaatc--tttgtttacagaatgatatggcagaacttctagggtctgcacgtccctaatcccaaaat 14414243  T
Q  199 ggcccct 205  Q
    |||||||    
T  14414242 ggcccct 14414236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 16772790 - 16772848
Alignment:
Q  299 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 359  Q
    |||||||||| |||| |||||| ||||| | |||||||||||||||||||||||| |||||    
T  16772790 caagaaattcgagagtcttggt-ctctctc-tccaagaattcgagagcttggtctttccct 16772848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 49987228 - 49987286
Alignment:
Q  298 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 358  Q
    ||||||||||| |||| |||||| ||||||| |||||||||| ||||| ||||||||||||    
T  49987228 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 49987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 357
Target Start/End: Original strand, 54886899 - 54886927
Alignment:
Q  329 ctccaagaattcgagagcttggtctctcc 357  Q
    |||||||||||||||||||||||||||||    
T  54886899 ctccaagaattcgagagcttggtctctcc 54886927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 14684707 - 14684556
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14684707 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 14684608  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684607 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 21306563 - 21306412
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21306563 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 21306464  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306463 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21306412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 14685767 - 14685617
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14685767 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 14685668  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685667 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14685617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 30246608 - 30246458
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30246608 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 30246509  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246508 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 30246458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 40421531 - 40421380
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40421531 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagagtaatattgcagaacttcgagggtctgcacctccctattgcc 40421432  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40421431 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40421380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 4517243 - 4517393
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4517243 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacatcgagggtctgcacctccctattgcca 4517342  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517343 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 4517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 21307619 - 21307469
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21307619 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 21307520  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21307519 aaaaggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 40422589 - 40422439
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  40422589 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 40422490  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40422489 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40422439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 33790094 - 33789943
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 343  Q
    ||||| |||||||||||||||||||| | |||||||  |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||    
T  33790094 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaagaaattcgagagtcttggttctctcccctccaagaatttgag 33789995  T
Q  344 agcttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33789994 agcttggtctctccctacctatcctttatcccaatccctgaatacctttctt 33789943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 12325068 - 12324917
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 343  Q
    ||||| |||||||||||||||||||| | |||||||  |||||||||||  |||||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  12325068 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaaggaattcgagagtcttggttctctcccctccaaaaattcgag 12324969  T
Q  344 agcttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    || |||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  12324968 agtttggtctctccctaccaatcctttatcgcaatccctgaatagctttctt 12324917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 18955505 - 18955452
Alignment:
Q  321 tctctcccctccaagaattcgagagcttggtctctccctacctatcctttatcc 374  Q
    |||||||| |||||||||| ||||| |||||||||||||||| |||||||||||    
T  18955505 tctctcccttccaagaattagagagattggtctctccctaccaatcctttatcc 18955452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 13218743 - 13218802
Alignment:
Q  298 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 358  Q
    ||||||||||| ||||  |||| |||||||| | |||||||||||||||||||||||||||    
T  13218743 ccaagaaattcaagagt-ttgggtctctcccttgcaagaattcgagagcttggtctctccc 13218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 3302494 - 3302449
Alignment:
Q  330 tccaagaattcgagagc-ttggtctctccctacctatcctttatcc 374  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||    
T  3302494 tccaagaattcaagagccttggtctctccctaccaatcctttatcc 3302449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 42599698 - 42599753
Alignment:
Q  298 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 354  Q
    ||||||||||| |||| ||||||| |||||| |||||||||| || |||||||||||    
T  42599698 ccaagaaattcaagagtcttggtt-tctcccttccaagaatttgaaagcttggtctc 42599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 8090040 - 8090191
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8090040 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 8090139  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090140 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 8090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 8089720 - 8089868
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  8089720 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 8089819  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8089820 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 8089868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 27962617 - 27962767
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  27962617 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 27962716  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962717 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 27962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 48907301 - 48907451
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  48907301 tgatagaaatcaattgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattacca 48907400  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48907401 aaatggccccttcccagtcaaatccttagatgcccctcaatcttcccatcc 48907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 8788534 - 8788682
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||    
T  8788534 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgaaagc 8788633  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8788634 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 8788682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 10582912 - 10582764
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10582912 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10582813  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10582812 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 10582764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 10584118 - 10583970
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10584118 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10584019  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10584018 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 10583970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 49122340 - 49122192
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  49122340 gataggaactgatatgaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 49122241  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49122240 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 49122192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 172880 - 173009
Alignment:
Q  115 agaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172880 agaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca 172979  T
Q  215 aatcctcagatgcccctcaatcttcccatc 244  Q
    ||||||||||||||||||||||||||||||    
T  172980 aatcctcagatgcccctcaatcttcccatc 173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 49123474 - 49123326
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||    
T  49123474 gataggaactgatatcaaaatataaactaatagtaagattagaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagtgc 49123375  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
        |||||||||||| |||||||| |||||||||||||||||||||||    
T  49123374 ccaatctctccctaccaatcctttaccccaatccctgaatacctttctt 49123326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 49122124 - 49122003
Alignment:
Q  274 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 373  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  49122124 taatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagcttgatctctccctaccaatcctttatc 49122025  T
Q  374 ccaatccctgaatacctttctt 395  Q
    ||||||||||||||||||||||    
T  49122024 ccaatccctgaatacctttctt 49122003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 248 - 362
Target Start/End: Original strand, 23540880 - 23540998
Alignment:
Q  248 ataggaactgatatcaaaatat--aaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaa--ttcgag 343  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |  ||| ||    
T  23540880 ataggaactgatatcaaaatatataaactaatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaag 23540979  T
Q  344 agcttggtctctccctacc 362  Q
    |||||||||||||||||||    
T  23540980 agcttggtctctccctacc 23540998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 23540999 - 23541112
Alignment:
Q  275 aatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaa--ttcgagagcttggtctctccctacctatcctttat 372  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |  ||| ||||||||||||||||||||| |||| ||||    
T  23540999 aatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaagagcttggtctctccctaccaatccattat 23541098  T
Q  373 cccaatccctgaat 386  Q
    ||||||||||||||    
T  23541099 cccaatccctgaat 23541112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 3815335 - 3815222
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataat-cccaagaaattctagagccttggttctctcccctccaagaattcgagag 345  Q
    ||||| |||||||||||||||| ||| ||||| ||| | ||||||| | | |||| ||||||| |||| ||||||||||||||||||||||||||||| |    
T  3815335 gatagaaactgatatcaaaatacaaattaatattaataatacaatagatttcccatgaaattcgagagtcttggttctctcccctccaagaattcgagtg 3815236  T
Q  346 cttggtctctccct 359  Q
    ||||||||||||||    
T  3815235 cttggtctctccct 3815222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 19950378 - 19950442
Alignment:
Q  287 acaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 351  Q
    |||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  19950378 acaataaattcccaagaaatttgagagccttggttctctcccctccaagaattcgagagcttggt 19950442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 36346541 - 36346653
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| |||||||| ||||||| ||| ||||| ||| | |||| ||    |||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  36346541 gatagaaactgataccaaaatacaaattaatattaataatacagtagttccccaagaaattcgagagtcttggttctctcccctccatgaattcgagagc 36346640  T
Q  347 ttggtctctccct 359  Q
    ||| |||||||||    
T  36346641 ttgatctctccct 36346653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 17826222 - 17826271
Alignment:
Q  309 tagagccttggttctctcccctccaagaattcgagagcttggtctctccc 358  Q
    ||||| ||||| ||||  ||||||||||||||||||||||||||||||||    
T  17826222 tagagtcttgggtctcctccctccaagaattcgagagcttggtctctccc 17826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 30038108 - 30038170
Alignment:
Q  296 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 358  Q
    ||||||||||||| |||| | | | |||||||| ||||||||||| |||| ||||||||||||    
T  30038108 tcccaagaaattcaagagtcgtcggtctctcccttccaagaattcaagagtttggtctctccc 30038170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 40670604 - 40670646
Alignment:
Q  317 tggttctctcccctccaagaattcgagagcttggtctctccct 359  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  40670604 tggttctctcccgtccaagaatttgagagcttggcctctccct 40670646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 18132989 - 18133137
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  18132989 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 18133088  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133089 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 18133137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 21535920 - 21535772
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21535920 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 21535821  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21535820 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 21535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 18131783 - 18131931
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  18131783 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagtattcgagagc 18131882  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18131883 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 18131931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 21395592 - 21395740
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  21395592 gatagaaactgatatcaaaatataaactaacagtaagattataatataatcccaagaaattcaagagtcttggttgtctcccctccaagaattcgagagc 21395691  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21395692 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttctt 21395740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 7033339 - 7033443
Alignment:
Q  248 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagct 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  7033339 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgaaagct 7033438  T
Q  348 tggtc 352  Q
    |||||    
T  7033439 tggtc 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 28889748 - 28889874
Alignment:
Q  100 gaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatg 199  Q
    |||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  28889748 gaaaccaactgatatagaagaatgaaatagggaaaatccatttgattacagaataatatcgcagaactttgagggtctgcaactccctaatgccaaaatg 28889847  T
Q  200 gccccttcccagtcaaatcctcagatg 226  Q
     ||||||||||||||||||||||||||    
T  28889848 accccttcccagtcaaatcctcagatg 28889874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 4303152 - 4303040
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| ||||| |||||||||  ||| ||||| ||| | ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4303152 gatagaaactggtatcaaaatccaaattaatattaataatacaatagattcccaagaaattctagagtcttggttctctcccctccaagaattcgagagc 4303053  T
Q  347 ttggtctctccct 359  Q
    |||||||||||||    
T  4303052 ttggtctctccct 4303040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 16189779 - 16189671
Alignment:
Q  247 gataggaactgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 344  Q
    ||||| ||||||||||||||  |||||| ||||||||| ||||||||| ||||||| | || |  ||||  |||||||||||||||||||||||||||||    
T  16189779 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagaatcccatggaaattgagagtgttggttctctcccctccaagaattcgaga 16189680  T
Q  345 gcttggtct 353  Q
    |||||||||    
T  16189679 gcttggtct 16189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 45036163 - 45036313
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45036163 tgatagaaatcaactgatatagaagaataaaatagggaaaattcctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 45036262  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45036263 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 45036313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 6540576 - 6540728
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgc-- 192  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||      
T  6540576 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 6540675  T
Q  193 caaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6540676 caaaatggccccttcccagtcaagtcctcagatgcccctcaatcttcccatcc 6540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 13255714 - 13255565
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||| ||||||||| ||||||||||| | || ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13255714 tgatagaaaccaactgatatagaagaataaatttggtaaattcc-tttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 13255616  T
Q  195 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13255615 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13255565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 40254615 - 40254469
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  40254615 gatagaaacagatatcaaaatataaattaatagtaatattacaatagaatcccaagaaattcgagagtcttggttctctcccctccaagaatt-gagagc 40254517  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  40254516 ttggtctctccctaccaatcctttatcccaatccctgaat-cctttctt 40254469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 250 - 358
Target Start/End: Complemental strand, 21661290 - 21661182
Alignment:
Q  250 aggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  21661290 aggaactgatatcaaaatataaactaatagtaagattacaatatattcccaagaaattcgagagtcttggttctctcccctccaataattcgagagcttg 21661191  T
Q  350 gtctctccc 358  Q
    |||||||||    
T  21661190 gtctctccc 21661182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 247 - 374
Target Start/End: Original strand, 2411062 - 2411187
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||||||||  |||| |||| |||||||||||||| ||||||  ||||    
T  2411062 gatagaaactgatatcaaaatataaactaatagtaatattacaatcgaatcccaagaaatttgagagtcttgattctctcccctccaggaattc--gagc 2411159  T
Q  347 ttggtctctccctacctatcctttatcc 374  Q
    |||||||||||||||| |||||||||||    
T  2411160 ttggtctctccctaccaatcctttatcc 2411187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 26246969 - 26247043
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggtt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  26246969 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggtt 26247043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 5176597 - 5176658
Alignment:
Q  296 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 358  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  5176597 tcccaaggaattcgagagtcttgggtctctccc-tccaagaattcgagagcttggtctctccc 5176658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 26187599 - 26187541
Alignment:
Q  296 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 354  Q
    ||||||||||||  |||||||||| |||||||| |||||||||| ||||||||||||||    
T  26187599 tcccaagaaatttgagagccttgggtctctcccttccaagaatttgagagcttggtctc 26187541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 13261037 - 13260936
Alignment:
Q  274 taatagtaagattacaatataatcccaagaaattctagagccttggttctctccc-ctccaagaattcgagagcttggtctctccctacctatcctttat 372  Q
    |||||||||  |||||||| | ||||||||||||| |||| ||||| ||||||||  | |||||||  ||||||||  |||||||| ||| |||||||||    
T  13261037 taatagtaatgttacaataaattcccaagaaattcgagagtcttggatctctcccttttcaagaatcagagagcttattctctcccgaccaatcctttat 13260938  T
Q  373 cc 374  Q
    ||    
T  13260937 cc 13260936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 19729244 - 19729212
Alignment:
Q  325 tcccctccaagaattcgagagcttggtctctcc 357  Q
    |||| ||||||||||||||||||||||||||||    
T  19729244 tcccttccaagaattcgagagcttggtctctcc 19729212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 43506411 - 43506470
Alignment:
Q  299 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 359  Q
    |||||||||| |||| |||||| ||||||| |  ||||||| |||||||||||||||||||    
T  43506411 caagaaattcgagagtcttggt-ctctccctttgaagaattagagagcttggtctctccct 43506470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 54938828 - 54938978
Alignment:
Q  94 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 193  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  54938828 ttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcc 54938927  T
Q  194 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54938928 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 54938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 11962242 - 11962094
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||    
T  11962242 gataggaactgatatcaaaatataaactaatagttagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtgttcgagagc 11962143  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    ||||||| |||||||| |||||||| |||||| ||||||||||||||||    
T  11962142 ttggtctatccctaccaatcctttaccccaatgcctgaatacctttctt 11962094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 54937788 - 54937908
Alignment:
Q  95 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 194  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |    
T  54937788 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcta 54937887  T
Q  195 aaatggccccttcccagtcaa 215  Q
    |||||||||||||||||||||    
T  54937888 aaatggccccttcccagtcaa 54937908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 247 - 380
Target Start/End: Complemental strand, 3567178 - 3567045
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||||| |||| |||||||||| |  | |||||||||||||||||||||||||||| ||     
T  3567178 gatagaaactgagatcaaaatataacctaatagtaatattacaatacaatctcaagaaattcaattgtcttggttctctcccctccaagaattcgatagt 3567079  T
Q  347 ttggtctctccctacctatcctttatcccaatcc 380  Q
    |||||||||||||||||||||||||| |||||||    
T  3567078 ttggtctctccctacctatcctttattccaatcc 3567045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 45638746 - 45638810
Alignment:
Q  331 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  45638746 ccaagaattcgagagcttggtctctccctacctaccctttatcccaatccctgaatgcctttctt 45638810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 27869434 - 27869371
Alignment:
Q  299 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacc 362  Q
    |||||||||| |||| ||||  |||||||| ||||||||||| |||||||||||||||||||||    
T  27869434 caagaaattcgagagtcttgcatctctcccttccaagaattcaagagcttggtctctccctacc 27869371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 45638710 - 45638752
Alignment:
Q  262 caaaatataaactaatagtaagattacaatataatcccaagaa 304  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  45638710 caaagtataaactaatagtaatattacaatataatcccaagaa 45638752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 32992448 - 32992387
Alignment:
Q  296 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 358  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||| |||||||||| |||||||||    
T  32992448 tcccaaggaattcgagagtcttgggtctctccc-tccaagaactcgagagctttgtctctccc 32992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 36982313 - 36982362
Alignment:
Q  296 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  36982313 tcccaaggaattctagagtcttggatctctccc-tccaagaattcgagagc 36982362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 80929 - 80781
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  80929 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaataaattcgagagtcttggttctctcccctccaagaattcgagagc 80830  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  80829 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 80781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 79728 - 79588
Alignment:
Q  252 gaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 351  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  79728 gaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggt 79629  T
Q  352 ctctccctacctatcctttatcccaatccctgaataccttt 392  Q
    |||||| |||||||||||||||| ||||| |||||||||||    
T  79628 ctctccgtacctatcctttatcctaatccatgaataccttt 79588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 247 - 392
Target Start/End: Complemental strand, 22950475 - 22950330
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  22950475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 22950376  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaataccttt 392  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  22950375 ttggtctctccctaccaatcctttatcccaatccctgaataccttt 22950330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 39701589 - 39701737
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39701589 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39701688  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  39701689 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttctt 39701737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 39702819 - 39702967
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39702819 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39702918  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  39702919 ttggtctctccctaccgatcctttatcccaatccctgaatgcctttctt 39702967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 29526039 - 29526188
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  29526039 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatccgagagtcttggttctctcccctccaagaattcgagagc 29526138  T
Q  347 ttggtctctccctacctatccttt-atcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  29526139 ttggtctctccctaccaatcctttaatcccaatccctgaatacctttctt 29526188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 19934768 - 19934620
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  19934768 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcaagagtcttggttctctcccctccaagtattcgagagc 19934669  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  19934668 ttggtctctccctaccaatcctttatcccaatccctaaatgcctttctt 19934620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 29527252 - 29527401
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctct-cccctccaagaattcgagag 345  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||    
T  29527252 gataggaacagatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctccccctccaagaattcaagag 29527351  T
Q  346 cttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29527352 cttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 29527401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 19139483 - 19139374
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  19139483 gatagaaactgatatcaaaatttaaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattagagagc 19139384  T
Q  347 ttggtctctc 356  Q
    ||||| ||||    
T  19139383 ttggtttctc 19139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 387
Target Start/End: Original strand, 41050926 - 41051069
Alignment:
Q  247 gataggaactgatatcaaaat-ataaactaatagtaag-attacaatataatcccaagaaattct-agagccttggttctctcccctccaagaattcgag 343  Q
    ||||| ||||||||||||||| ||||| | |||||||  || |||||| |||||||||||||||  |||| ||||||||| |||||||||||||||| ||    
T  41050926 gatagaaactgatatcaaaattataaatttatagtaattatcacaatagaatcccaagaaattccgagagtcttggttctgtcccctccaagaattcaag 41051025  T
Q  344 agcttggtctctccctacctatcctttatcccaatccctgaata 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41051026 agcttggtctctccctacctatcctttatcccaatccctgaata 41051069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 5033290 - 5033188
Alignment:
Q  118 agaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtcaaat 217  Q
    ||||||||||||||||| ||||||||||||||||| || ||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  5033290 agaataaaatagggaaa-tccctttgattacagaa-aacatcacagaactttgaggctctgcacctccctat-gccaaaatggccccttcccagtcaaat 5033194  T
Q  218 cctcag 223  Q
    ||||||    
T  5033193 cctcag 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 35144500 - 35144613
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaata-taatcccaagaaattctagagccttggttctctcccctccaagaattcgagag 345  Q
    ||||| |||||||||||||||  ||| ||||| ||| | ||||||| |  ||| ||||||||| |||| ||||||||||||||||||||||||||||||     
T  35144500 gatagaaactgatatcaaaattcaaattaatattaataatacaatagttttcctaagaaattcgagagtcttggttctctcccctccaagaattcgagac 35144599  T
Q  346 cttggtctctccct 359  Q
    ||||||||||||||    
T  35144600 cttggtctctccct 35144613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 359
Target Start/End: Complemental strand, 37473660 - 37473631
Alignment:
Q  330 tccaagaattcgagagcttggtctctccct 359  Q
    ||||||||||||||||||||||||||||||    
T  37473660 tccaagaattcgagagcttggtctctccct 37473631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 211667 - 211815
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  211667 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 211766  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  211767 ttggtctctccctaccaatcctttatcccaatccctgaatacctttctt 211815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 205590 - 205738
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  205590 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 205689  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  205690 ttggtctctccctaccaatcctttatcccaatccctgaatatctttctt 205738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 11288 - 11140
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  |||||||||    
T  11288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagttttcgagagc 11189  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  11188 ttggtctctccctaccaatcctttatcccaatccctgaatatctttctt 11140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 12436 - 12288
Alignment:
Q  247 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 346  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| |||||    
T  12436 gataggaacttatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagagttcaagagc 12337  T
Q  347 ttggtctctccctacctatcctttatcccaatccctgaatacctttctt 395  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12336 ttggtctctccctacctatcctttatcccaatccctgaataactttctt 12288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 177889 - 178012
Alignment:
Q  272 actaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatccttta 371  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  177889 actaatggtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccctaccaatccttta 177988  T
Q  372 tcccaatccctgaatacctttctt 395  Q
     |||||||||||||||||||||||    
T  177989 ccccaatccctgaatacctttctt 178012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 358
Target Start/End: Complemental strand, 33934 - 33903
Alignment:
Q  327 ccctccaagaattcgagagcttggtctctccc 358  Q
    ||||||||||||||||||||||||||||||||    
T  33934 ccctccaagaattcgagagcttggtctctccc 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University