View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19794_low_6 (Length: 361)
Name: NF19794_low_6
Description: NF19794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19794_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 31584116 - 31584319
Alignment:
| Q |
16 |
atatatgtaaacaatacttatatttctatcatatcatgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatattgtaacnnnnnnnnggnnnnn |
115 |
Q |
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| T |
31584116 |
atatatctaaacaatacttctatttatatcttatcatgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatattgtaactttttctcggaaaaa |
31584215 |
T |
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| Q |
116 |
nngtattgcaaattttaaatagataacacttatacgcatgttccattatggccagcccaaacattcaaactatttaacatttggatcatcccaattcgaa |
215 |
Q |
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| T |
31584216 |
aa-tattgcaaattttaaatagataacacttgtacgcatgttccattatcgccagcccaaacattcaaactatttaacatttggatcatcccaattcgaa |
31584314 |
T |
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| Q |
216 |
catcc |
220 |
Q |
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||||| |
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| T |
31584315 |
catcc |
31584319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 31584392 - 31584452
Alignment:
| Q |
286 |
aattatcttctctctttatcaagagatatgaaaaggattgaaaaggattgaaggatgtttg |
346 |
Q |
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| T |
31584392 |
aattatcttctctctttatcaagagatataaaaaggattgaaaaggattgaaggatgtttg |
31584452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 31582281 - 31582325
Alignment:
| Q |
51 |
atgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatatt |
95 |
Q |
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| T |
31582281 |
atgcatgaatatgtgtacgtgtatgtgtgtagtttaagtaatatt |
31582325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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