View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_high_12 (Length: 384)
Name: NF19795_high_12
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 39516563 - 39516205
Alignment:
| Q |
15 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39516563 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
39516464 |
T |
|
| Q |
115 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39516463 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcagattctgttttctctcagttgaaaatagatga |
39516364 |
T |
|
| Q |
215 |
tgctagatagattttcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggctcacttccctcttttgtccttgtttccttg |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39516363 |
tgctagatagatattcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagatggctcacttccctcttttgtccttgtttccttg |
39516264 |
T |
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| Q |
315 |
tatttttcatacttagttatggttgttggtctattcttaatcgtaagactaatgatgat |
373 |
Q |
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| T |
39516263 |
tatttttcatacttggttatggttgttggtctattcttaattgtaagactaatgatgat |
39516205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 39509495 - 39509276
Alignment:
| Q |
15 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
114 |
Q |
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| T |
39509495 |
cagagaggtgcagtacatagagaacctcatgaggatagttctaacagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaata |
39509396 |
T |
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| Q |
115 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcggattctgttttctctcagttgaaaatagatga |
214 |
Q |
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|||||||||||| |||||| | ||||||||||||| || ||||||||||||||||||||||| | | |||||||||||||| ||||||| | ||||| |
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| T |
39509395 |
cactgagtgaagtggatgatatgtctatgtctattttgagggttattgatgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatga |
39509296 |
T |
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| Q |
215 |
tgctagatagattttcatgt |
234 |
Q |
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||| |||||||||||||||| |
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| T |
39509295 |
tgccagatagattttcatgt |
39509276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 39574392 - 39574284
Alignment:
| Q |
33 |
agagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatg |
132 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| | ||| |||||||||||||||| || ||||| ||||| |
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| T |
39574392 |
agagaaccgcatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatg |
39574293 |
T |
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| Q |
133 |
acacgtcta |
141 |
Q |
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|||||||| |
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| T |
39574292 |
gcacgtcta |
39574284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 39578925 - 39578817
Alignment:
| Q |
33 |
agagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatg |
132 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| | ||| ||||| |
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| T |
39578925 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatg |
39578826 |
T |
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| Q |
133 |
acacgtcta |
141 |
Q |
| |
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|||||||| |
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| T |
39578825 |
gcacgtcta |
39578817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 39542543 - 39542449
Alignment:
| Q |
47 |
ggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
141 |
Q |
| |
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|||||||||||||||||||| || ||| |||||||||||||||||| ||||| |||||||||||| |||||| ||||| ||||| |||||||| |
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| T |
39542543 |
ggatagttctagcagtgcttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtcta |
39542449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 39509245 - 39509197
Alignment:
| Q |
242 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctcactt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39509245 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 39509070 - 39509016
Alignment:
| Q |
281 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttagttat |
334 |
Q |
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|||||||||| || |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttat |
39509016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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