View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_high_15 (Length: 360)
Name: NF19795_high_15
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 44546841 - 44546491
Alignment:
| Q |
1 |
tttctggaatctttatcggacgtcctcttttccttttaccagcatttttatttccttttgaagccacatcacttttcttattgttaatcccacgtttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546841 |
tttctggaatctttatcggacgtcctcttttccttttaccagcatttttatttccttttgaagccacatcacttttcttattgttaatcccacgtttcct |
44546742 |
T |
|
| Q |
101 |
agcagcagagccagagagttttgttgcacctttcaatttcctacccctaccacccttctttgaaaccacacgatttgtttgaacattacgtctctttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546741 |
agcagcagagccagagagttttgttgcacctttcaatttcctacccctaccacccttctttgaaaccacacgatttgtttgaacattacgtctctttcca |
44546642 |
T |
|
| Q |
201 |
ccaagtttaccctttttctttgttgcacatgatgattcatnnnnnnnatattttacatacacatcatcctcaactatctcaagtacattagattttccat |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546641 |
ccaagtttatcctttttctttgttgcacatgatgattcatcccccccatattttacatacacatcatcctcaactatctcaagtacattagattttccat |
44546542 |
T |
|
| Q |
301 |
gacgcttcatatgcttcattaaaaacctatgtcgttcattttcttcttcat |
351 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44546541 |
gacgcttcatatgcttcaataaaaacctatgtcgttcattttcttcttcat |
44546491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University