View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_high_17 (Length: 348)
Name: NF19795_high_17
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 12810888 - 12811210
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12810888 |
aagaaaatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
12810987 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12810988 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
12811087 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811088 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
12811187 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12811188 |
cttgatttagatctaaacaaaat |
12811210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 43873216 - 43873309
Alignment:
| Q |
25 |
aagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagactcactagaga |
118 |
Q |
| |
|
||||||||||||| | ||| |||||| |||||||||||||| || ||| ||||||||||| || | ||||| ||||||||| |||||| ||||| |
|
|
| T |
43873216 |
aagaaaatggctacagaaggaccatcatttagtttgggaatcgaatcaaattctgaggatctgttaaatcgcattgttgaaaactcaccagaga |
43873309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 1655503 - 1655181
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1655503 |
aagaaaatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
1655404 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655403 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
1655304 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655303 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
1655204 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1655203 |
cttgatttagatctaaacaaaat |
1655181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 37153160 - 37152838
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37153160 |
aagaaaatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
37153061 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37153060 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
37152961 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37152960 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaaactgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
37152861 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37152860 |
cttgatttagatctaaacaaaat |
37152838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 45223477 - 45223155
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45223477 |
aagaaaatggttttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
45223378 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45223377 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
45223278 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45223277 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
45223178 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45223177 |
cttgatttagatctaaacaaaat |
45223155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 9128699 - 9129021
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9128699 |
aagaaaatggttttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
9128798 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9128799 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
9128898 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9128899 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
9128998 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
9128999 |
cttaatttagatctaaacaaaat |
9129021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 26651257 - 26651115
Alignment:
| Q |
25 |
aagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagactcactagagaaagatg |
124 |
Q |
| |
|
|||||||||| ||| ||| |||||| |||||||||||||| || ||||||||||||||| | | ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
26651257 |
aagaaaatggttattgaaggaccatcatttagtttgggaatcgaatcagattctgaggatctattaaatcgcattgttgaagactcgccagagaaagatg |
26651158 |
T |
|
| Q |
125 |
gggaggttgaacagattcaaaatgttgagggtgaagtgaattc |
167 |
Q |
| |
|
|||||| || ||| ||||| |||||||| ||||||||||||| |
|
|
| T |
26651157 |
gggaggctggacacgttcaagatgttgagagtgaagtgaattc |
26651115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 26651114 - 26651039
Alignment:
| Q |
201 |
caaacacaactttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagtt |
276 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||||| ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
26651114 |
caaacacaactttgatctcaatgaaattcctaatgaaggtgaagatgctgttgaagttgatgatattaatgaagtt |
26651039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 23781431 - 23781109
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23781431 |
aagaaaatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
23781332 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23781331 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
23781232 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23781231 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
23781132 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23781131 |
cttgatttagatctaaacaaaat |
23781109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 52635512 - 52635834
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52635512 |
aagaaaatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
52635611 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52635612 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
52635711 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52635712 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
52635811 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52635812 |
cttgatttagatctaaacaaaat |
52635834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 3790451 - 3790773
Alignment:
| Q |
10 |
aagaatatggctttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagact |
109 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3790451 |
aagaaaatggttttcaagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatctgctgaatcgaattgttgaagact |
3790550 |
T |
|
| Q |
110 |
cactagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3790551 |
cgctagagaaagatggggaggttgaacagattcaaaatgttgagggtgaagtgaattctcaccatcatgttgaaggtggagaaagaagcttcaaacacaa |
3790650 |
T |
|
| Q |
210 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3790651 |
ctttgatcttaacgaaattcctaatgaaagtgaaggtgctgctgaagctgatgatgttaatgaagttcttaatccagttgaaggtgctgctgaagctgaa |
3790750 |
T |
|
| Q |
310 |
cttgatttagatctaaacaaaat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3790751 |
cttgatttagatctaaacaaaat |
3790773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 3055299 - 3055206
Alignment:
| Q |
25 |
aagaaaatggctataaaagcaccatcttttagtttgggaattgactcagattctgaggatttgctgaatcgaattgttgaagactcactagaga |
118 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||||| || ||||||||||||||| | | ||||| |||||||||||||||||||||| |
|
|
| T |
3055299 |
aagaaaatggctatagaaggaccatcatttagtttgggaatcgaatcagattctgaggatctattaaatcgcattgttgaagactcactagaga |
3055206 |
T |
|
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