View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19795_high_18 (Length: 344)

Name: NF19795_high_18
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19795_high_18
NF19795_high_18
[»] chr2 (1 HSPs)
chr2 (37-335)||(27876179-27876485)
[»] chr4 (3 HSPs)
chr4 (2-42)||(33137253-33137293)
chr4 (5-37)||(33134890-33134922)
chr4 (1-37)||(55542603-55542639)
[»] chr3 (3 HSPs)
chr3 (2-37)||(20585669-20585704)
chr3 (2-35)||(45267306-45267339)
chr3 (1-37)||(45268594-45268630)
[»] chr1 (4 HSPs)
chr1 (2-36)||(46075075-46075109)
chr1 (2-39)||(45979521-45979558)
chr1 (2-42)||(27262902-27262942)
chr1 (1-37)||(46073884-46073920)
[»] chr7 (1 HSPs)
chr7 (5-37)||(41693644-41693676)
[»] chr5 (1 HSPs)
chr5 (4-36)||(31541649-31541681)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 37 - 335
Target Start/End: Original strand, 27876179 - 27876485
Alignment:
Q  37 tcatttttgacataaaattaaacttcaataaaataagaatagtagaattagaatgaccatgtataggtttcacatccgtgatcataattcaaatggtaga 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27876179 tcatttttgacataaaattaaacttcaataaaataagaatagtagaattagaatgaccatgtataggtctcacatccgtgatcataattcaaatggtaga 27876278  T
Q  137 gacagtagaatatgtagaggtttgaactcgagattattcac--------attaagagtgaaattctggtcactaaactatgtaatgtgttacttagtcaa 228  Q
    |||| |||| || ||||||||||||||| ||||||||||||        |||||| |||||||||||| |||||||||||||||| ||||||||||||||    
T  27876279 gacaatagagtacgtagaggtttgaacttgagattattcacttattcatattaagggtgaaattctggccactaaactatgtaatctgttacttagtcaa 27876378  T
Q  229 aaggaagnnnnnnngaatgaccatgtattggtgccacgttcgtgatcatagcttagttggtatgaatattaaaatatgtagaggttgaagttcgaatcca 328  Q
    |||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  27876379 aaggaagaaaaaaagaatgaccatgcattggtgccacgttcgtgatcatagcttagttggtatgaacattgcaatatgtagaggttgaagttcgattcca 27876478  T
Q  329 gaattat 335  Q
    |||||||    
T  27876479 gaattat 27876485  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 33137253 - 33137293
Alignment:
Q  2 gctatattggcagggatcaaaaacatattttagcctcattt 42  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  33137253 gctatatttgcagggatcaaaaacatattttagccttattt 33137293  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 33134922 - 33134890
Alignment:
Q  5 atattggcagggatcaaaaacatattttagcct 37  Q
    ||||| |||||||||||||||||||||||||||    
T  33134922 atatttgcagggatcaaaaacatattttagcct 33134890  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55542603 - 55542639
Alignment:
Q  1 tgctatattggcagggatcaaaaacatattttagcct 37  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  55542603 tgctatatttgcagggatcaaaaacagattttagcct 55542639  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 20585669 - 20585704
Alignment:
Q  2 gctatattggcagggatcaaaaacatattttagcct 37  Q
    |||||||| |||||||||||||||||||||||||||    
T  20585669 gctatatttgcagggatcaaaaacatattttagcct 20585704  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 45267339 - 45267306
Alignment:
Q  2 gctatattggcagggatcaaaaacatattttagc 35  Q
    |||||||| |||||||||||||||||||||||||    
T  45267339 gctatatttgcagggatcaaaaacatattttagc 45267306  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45268594 - 45268630
Alignment:
Q  1 tgctatattggcagggatcaaaaacatattttagcct 37  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  45268594 tgctatatttgcagggattaaaaacatattttagcct 45268630  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 46075075 - 46075109
Alignment:
Q  2 gctatattggcagggatcaaaaacatattttagcc 36  Q
    |||||||| ||||||||||||||||||||||||||    
T  46075075 gctatatttgcagggatcaaaaacatattttagcc 46075109  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 45979521 - 45979558
Alignment:
Q  2 gctatattggcagggatcaaaaacatattttagcctca 39  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  45979521 gctatatttgcagggaccaaaaacatattttagcctca 45979558  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 27262942 - 27262902
Alignment:
Q  2 gctatattggcagggatcaaaaacatattttagcctcattt 42  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  27262942 gctatatttgcagggaccaaaaacatattttagccttattt 27262902  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46073920 - 46073884
Alignment:
Q  1 tgctatattggcagggatcaaaaacatattttagcct 37  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  46073920 tgctatatttgcagggatcaaaagcatattttagcct 46073884  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 41693676 - 41693644
Alignment:
Q  5 atattggcagggatcaaaaacatattttagcct 37  Q
    ||||| |||||||||||||||||||||||||||    
T  41693676 atatttgcagggatcaaaaacatattttagcct 41693644  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 31541649 - 31541681
Alignment:
Q  4 tatattggcagggatcaaaaacatattttagcc 36  Q
    |||||| ||||||||||||||||||||||||||    
T  31541649 tatatttgcagggatcaaaaacatattttagcc 31541681  T

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