View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19795_high_19 (Length: 333)

Name: NF19795_high_19
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19795_high_19
NF19795_high_19
[»] chr8 (3 HSPs)
chr8 (1-315)||(2119782-2120096)
chr8 (2-44)||(32241422-32241464)
chr8 (5-38)||(29730900-29730933)
[»] chr6 (1 HSPs)
chr6 (2-84)||(4238488-4238572)
[»] chr5 (2 HSPs)
chr5 (5-83)||(35646045-35646127)
chr5 (5-38)||(8692823-8692856)
[»] chr2 (3 HSPs)
chr2 (5-44)||(565159-565198)
chr2 (5-115)||(28572278-28572395)
chr2 (2-38)||(33602230-33602266)
[»] chr1 (1 HSPs)
chr1 (2-44)||(13500728-13500770)
[»] chr7 (1 HSPs)
chr7 (7-39)||(29645237-29645269)
[»] chr3 (2 HSPs)
chr3 (2-50)||(8706213-8706261)
chr3 (2-50)||(9058100-9058148)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 2119782 - 2120096
Alignment:
Q  1 atgaagaatgcaccaatacataacaagaacacttaaaataatttatctctattat-ttagatatttatcttaatatgtttgaaataaataattaagctaa 99  Q
    |||||||||| ||||||| |||||| ||||||||||||| |||| ||||| || | ||| | |||||||||||||| |||||||||||||||| ||||||    
T  2119782 atgaagaatgtaccaatatataacaggaacacttaaaattatttttctctcttttattatacatttatcttaatatatttgaaataaataattcagctaa 2119881  T
Q  100 ttcgggatggagggagaagtgtttgtcttgtgcaatgattatggatgatgagatcacgattttttgtggtccaaatatcacacacaactttcactgttgg 199  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |||    
T  2119882 ttcaggatg-agggagaagtgtttgtcttgtgcaatgattatggatgatgggatcacgattttttgtggtccaaatatcacacataactttaactgatgg 2119980  T
Q  200 tttgtgaacagaagatccatatcagacatttaatttcattgtagtagaagagtctcaattgtcgatcaaaatttgatccattgagagttgcaaccagatg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2119981 tttgtgaacagaagatccatatcagacatttaatttcattgtagtagaagagtctcaattgtcgatcaaaatttgatccattgagagttgcaaccagatg 2120080  T
Q  300 acatgaatgatgtcac 315  Q
    ||||||||||||||||    
T  2120081 acatgaatgatgtcac 2120096  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 32241464 - 32241422
Alignment:
Q  2 tgaagaatgcaccaatacataacaagaacacttaaaataattt 44  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||    
T  32241464 tgaagaatgcatcaatacttaacaagaacacttaaaatcattt 32241422  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 29730933 - 29730900
Alignment:
Q  5 agaatgcaccaatacataacaagaacacttaaaa 38  Q
    ||||||||||||||| ||||||||||||||||||    
T  29730933 agaatgcaccaatacttaacaagaacacttaaaa 29730900  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 4238488 - 4238572
Alignment:
Q  2 tgaagaatgcaccaatacataacaagaacacttaaaa-ta-atttatctctattatttagatatttatcttaatatgtttgaaat 84  Q
    |||||||||||||||||| |||||||| ||||||||| || |||| ||||| | ||||| | ||||||||| |||||| ||||||    
T  4238488 tgaagaatgcaccaatacttaacaagagcacttaaaactatatttctctctttcatttatacatttatcttgatatgtgtgaaat 4238572  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 35646127 - 35646045
Alignment:
Q  5 agaatgcaccaatacataacaagaacacttaaaataatttatctct---att-atttagatatttatcttaatatgtttgaaa 83  Q
    ||||||||||||||| |||||||| |||||||||| |||| |||||   ||| ||||| |||||| ||||||||||| |||||    
T  35646127 agaatgcaccaatacttaacaagatcacttaaaatcatttttctctctcattcatttatatatttgtcttaatatgtgtgaaa 35646045  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 8692856 - 8692823
Alignment:
Q  5 agaatgcaccaatacataacaagaacacttaaaa 38  Q
    ||||||||||||||| ||||||||||||||||||    
T  8692856 agaatgcaccaatacttaacaagaacacttaaaa 8692823  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 565159 - 565198
Alignment:
Q  5 agaatgcaccaatacataacaagaacacttaaaataattt 44  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  565159 agaatgcaccaatacttaacaagaacacttaaaatcattt 565198  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 28572278 - 28572395
Alignment:
Q  5 agaatgcaccaatacataacaagaacacttaaaataattta---tctctattatttagatatttatcttaatatgtttgaaat-aaataat---taagct 97  Q
    ||||||||||||||| |||||||| |||||||||| ||||    ||||  ||||||| | |||| ||||||||||| |||||| ||| |||   | ||||    
T  28572278 agaatgcaccaatacttaacaagagcacttaaaatcattttctctctcctttatttatacatttgtcttaatatgtgtgaaatgaaaaaatggctcagct 28572377  T
Q  98 aattcgggatggagggag 115  Q
    ||||||||| ||||||||    
T  28572378 aattcgggacggagggag 28572395  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 33602266 - 33602230
Alignment:
Q  2 tgaagaatgcaccaatacataacaagaacacttaaaa 38  Q
    |||||||||||| |||||||||||||| |||||||||    
T  33602266 tgaagaatgcactaatacataacaagagcacttaaaa 33602230  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 13500770 - 13500728
Alignment:
Q  2 tgaagaatgcaccaatacataacaagaacacttaaaataattt 44  Q
    ||||||||||||||||||||||||| | |||||||||| ||||    
T  13500770 tgaagaatgcaccaatacataacaaaagcacttaaaatcattt 13500728  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 29645269 - 29645237
Alignment:
Q  7 aatgcaccaatacataacaagaacacttaaaat 39  Q
    ||||||||||||| |||||||||||||||||||    
T  29645269 aatgcaccaatacttaacaagaacacttaaaat 29645237  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 8706213 - 8706261
Alignment:
Q  2 tgaagaatgcaccaatacataacaagaacacttaaaataatttatctct 50  Q
    ||||||||||| |||||| |||||||| |||||||||| |||| |||||    
T  8706213 tgaagaatgcatcaatacttaacaagagcacttaaaatcatttctctct 8706261  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 9058100 - 9058148
Alignment:
Q  2 tgaagaatgcaccaatacataacaagaacacttaaaataatttatctct 50  Q
    ||||||||||| |||||| |||||||| |||||||||| |||| |||||    
T  9058100 tgaagaatgcatcaatacttaacaagagcacttaaaatcatttctctct 9058148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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