View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_high_2 (Length: 582)
Name: NF19795_high_2
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Original strand, 40641541 - 40642086
Alignment:
| Q |
19 |
tatgacgtgatagaatctctattccattccgttccatttcattgagttccattccgctccactctattacatttcatcaatccaaacatagcttaaccnn |
118 |
Q |
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| T |
40641541 |
tatgacgtgacagaatctctattccattccgttccatttcattgagttccattccgctccaatctattacgtttcatcaatccaaacagagcttaacctt |
40641640 |
T |
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| Q |
119 |
nnnnngaggggaacctcttcttaatcttgattctgattagttaaaaccttttatgaaatgcatataagggattcagatagcaatttgttaccaaaaagat |
218 |
Q |
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| T |
40641641 |
tttttgaggggaaccttttcttaatcttgactctgattagttaaaaccttttatgaaatgcacataagggattcagatagcaatttgttaccaaaaagat |
40641740 |
T |
|
| Q |
219 |
aactatttgttcacatccttaattttattagaagatgattttatcttttctgaaagtttactataagggattannnnnnngaatacagaaattttaatta |
318 |
Q |
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| T |
40641741 |
aactatttgttcacatccttaattttattagaagatgattttatcttttctgaaagtttactataagggattatttttttgaatacagaaatcataatta |
40641840 |
T |
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| Q |
319 |
tctaggtcacctttgnnnnnnntgtgtattccttaagcactaaaattaaaatttagacaaggctttatactattttccaaaggcaacctagaattttagt |
418 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40641841 |
tctaggtcacctttgaaaaaaatgtatattccttaagcactaaaattaaaatttagacaaggctttatactattttccaaaggcaacctagaattttagt |
40641940 |
T |
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| Q |
419 |
gaaaatggatttttcttggtgttccctctggtttgatgtgaaaatctctttgaaacttacaatttgaagtaaatgctgaaaaatttgaatgctggtttat |
518 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
40641941 |
gaagatggatttttcttggtgttccctctggtttgatgtgaaaatctctttcaaacttacaatttggagtaaatgccgaaaaatttgaatgctggtttat |
40642040 |
T |
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| Q |
519 |
actgaaatggttgctctgtggtttgtttgattctgtacaaagagta |
564 |
Q |
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| T |
40642041 |
actgaaatggttactctgtggtttgtttgattctgtacaaagagta |
40642086 |
T |
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