View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_high_26 (Length: 253)
Name: NF19795_high_26
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 4155224 - 4155131
Alignment:
| Q |
50 |
taagaagtgtaccacgtctggatatatattaatggcgcaggcctcgatcgtgtttagatagcattcatcatttccatgctgcaattattgaagg |
143 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4155224 |
taagaactgtaccacgtctggatatatattaatggcgcaggcctcgatcgtgtttagatagcattcatcatttccatgctgcaattattgaagg |
4155131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 4160396 - 4160300
Alignment:
| Q |
42 |
ttcataggtaagaagtgtaccacgtctggatatatattaatggcgcaggcctcgatcgtgtttagatagcattcatcatttccatgctgcaattatt |
138 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||| ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4160396 |
ttcataggtaggaactgtaccacgtctgcatatgctttaatggtgcaggcctcgatcgagtttagcaagcattcatcatttccatgctgcaattatt |
4160300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 4155076 - 4155021
Alignment:
| Q |
166 |
gcaagtggttttcattagataacttaaaagtgacttgataacattttcttataatt |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4155076 |
gcaagtggttttcatgagataacttaaaagtgacttgttaacattttcttataatt |
4155021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University