View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_high_29 (Length: 248)
Name: NF19795_high_29
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 40597874 - 40597664
Alignment:
| Q |
23 |
tagagggtattcaaatttctagagtagaggaaggttcgcaaaaattataagagaaattattaaaagtgatctagagatatgatattcaatataacactgc |
122 |
Q |
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| T |
40597874 |
tagagggtgttcaaatttttagagtagaggaaggtccgcaaaaattataagagaaattattaaaagtgatttagagatatgatattcaatataacactgc |
40597775 |
T |
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| Q |
123 |
cgtcatttaatccatgcaggagtgggagtgatggaaaataatgtatcgatggtccccatacgagtgtggataaataaatttagaggttgaaattacttgt |
222 |
Q |
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| T |
40597774 |
cgtcatttaatccatgcaggagtgagagtgatggaaaataatgtattgatggtccccatatgagtgtggataaataaatttagaggttgaatttacttgt |
40597675 |
T |
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| Q |
223 |
atgtgtatcat |
233 |
Q |
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|| |||||||| |
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| T |
40597674 |
atatgtatcat |
40597664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 41779249 - 41779211
Alignment:
| Q |
62 |
aaaaattataagagaaattattaaaagtgatctagagat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
41779249 |
aaaaattataagagaaattattaaaaaagatctagagat |
41779211 |
T |
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