View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_high_34 (Length: 236)
Name: NF19795_high_34
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 7426332 - 7426108
Alignment:
| Q |
2 |
atcttgaagaaaaaataacctgaaaatcaactctaataataatttttcaatcactctaacttcattgaaagtaattctattgaaatcatcgtaggactca |
101 |
Q |
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||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7426332 |
atcttcaagaaataataacctgcaaatcaactctaataataatttttcaatcattctaacttcattgaaagtaattctattgaaatcatcgtaggactca |
7426233 |
T |
|
| Q |
102 |
aaaatgaaga---tttaatcctttcaactctactagtacattccttc---nnnnnnnctctactatgtcccctatcatatttcaccagtagatagtagat |
195 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7426232 |
aaaatgaagattttttaatcctttcaactctactagtacattccttcaaaaaaaaaactctactatgtcccctatcatatttcaccagtagatagtagat |
7426133 |
T |
|
| Q |
196 |
acttctaatcgtcaatcgtggtaat |
220 |
Q |
| |
|
|||||||||||||| ||| |||||| |
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| T |
7426132 |
acttctaatcgtcactcgcggtaat |
7426108 |
T |
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