View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_high_8 (Length: 466)
Name: NF19795_high_8
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 9648233 - 9647939
Alignment:
| Q |
12 |
agagagttgtaagcagaaggatcacactgaagttcttcatcttcttccaacctgtccacaccaggttgccacactttaaccggaagctgtggcactgaag |
111 |
Q |
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| T |
9648233 |
agagagttgtaagcagaaggatcacactgaagttcttcatcttcttccaacctgtccacaccaggttgccacactttaactggaagctgtggcactgaag |
9648134 |
T |
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| Q |
112 |
aagatgattcgcttcgtttcttggagtcccagatataaattttgcacaatgccacaaaaattagatgtgttcacaatgaaagaaataaaataaataatga |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9648133 |
aagatgattcgcttcgtttcttggagtcccggatataaattttgcacaatgccacaaaaattagacgtgttcacaatgaaagaaataaaataaataatga |
9648034 |
T |
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| Q |
212 |
agtggttgaattgaatgaagcacaaaataatacaccttggtctttctttggcgatgttttatgcagcgagtcatgtttgattagctcagagtctt |
306 |
Q |
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| T |
9648033 |
agtggttgaattgaatgaagcaaacaataatacaccttggtctttctttggcgatgttttatgcagcgagtcatgtttgattagctcagagtctt |
9647939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 34739311 - 34739403
Alignment:
| Q |
12 |
agagagttgtaagcagaaggatcacactgaagttcttcatcttcttccaacctgtccacaccaggttgccacactttaaccggaagctgtggc |
104 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34739311 |
agagagttgtaagcagaaggatcacactgaagctcttcatcttcttccaacttatccacaccaggttgccacacttttaccggaacctgtggc |
34739403 |
T |
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