View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_low_1 (Length: 692)
Name: NF19795_low_1
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 16 - 687
Target Start/End: Complemental strand, 54721752 - 54721085
Alignment:
| Q |
16 |
tcattgtgttcatccttcacaatgcctggtttcaaatcgagtatggaaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721752 |
tcattgtgttcatccttcacaatgcctggtttcgaatcgagtatggaaatggttgacatgcgtgcatcaaaccacaaattactcgagaatccggcaataa |
54721653 |
T |
|
| Q |
116 |
aatacatgatatcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaagg |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721652 |
aataca-gatatcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaagg |
54721554 |
T |
|
| Q |
216 |
atttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721553 |
atttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccac |
54721454 |
T |
|
| Q |
316 |
ataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721453 |
ataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagc |
54721354 |
T |
|
| Q |
416 |
ttcatctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagtaccagcttcatctttcaccagttgattagctctt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
54721353 |
ttcatctttcactagtaattgattaactcttccatcac---cctcagcagcagcactattcagagtaccaacttcatctttcaccagttgattagctctt |
54721257 |
T |
|
| Q |
516 |
acttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtaca |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721256 |
acttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtaca |
54721157 |
T |
|
| Q |
616 |
atatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatctcact |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
54721156 |
atatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatatcact |
54721085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 390 - 687
Target Start/End: Complemental strand, 54714450 - 54714165
Alignment:
| Q |
390 |
tcatcatcatcatgaagctgatcagcttca---tctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagtaccag |
486 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||| || ||||||||||||||||||||| | |||||||| ||||||||| |||||| |
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|
| T |
54714450 |
tcatcatcatcatcatgctgatcagcttcaatatctttcaccggt---tgattaactcttccatcacccccggcagcagca---ctattcagaataccag |
54714357 |
T |
|
| Q |
487 |
cttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtga |
586 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || ||| |
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|
| T |
54714356 |
cttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattga |
54714257 |
T |
|
| Q |
587 |
aacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatctcac |
686 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
54714256 |
a---------gtttttgccatagtgtacaatatcactcagtatttttattttcttcctatcgttattgttttgcatggaataaaataggcttcatatcac |
54714166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 54714816 - 54714572
Alignment:
| Q |
27 |
atccttcacaatgcctggtttcaaatcgagtatggaaatggttgacatgcatgcatcaaacca-caaattactcgagaatccggcaataaaatacatg-- |
123 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
54714816 |
atccttcacattgcctggtctcaaatcgagtatggaa-tggttgacatgcacgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagata |
54714718 |
T |
|
| Q |
124 |
---atatcatcacacatacacacatttatttgat-------------acatatatagatagataaaaataacacacaaaccatggccgcaatctctgatc |
207 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
54714717 |
tcaatatcatctcacataaacacatttatttgatttgatatatatatatatagatagatagatataaataacacacaaaccatggccgcaatctctgatc |
54714618 |
T |
|
| Q |
208 |
aaggaaggatttcagcgttagggttaccgctcttagccacaatgga |
253 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54714617 |
atggaaggatttcagcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 619
Target Start/End: Complemental strand, 54728205 - 54728077
Alignment:
| Q |
485 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
584 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| ||||| ||||||||||||||| || ||||||||| |||||||||| ||||||||| |
|
|
| T |
54728205 |
agcttcatctttctccagttgattatctcttcccacacccgcagcaa---cactatagccattcacaaa-aatgccacaacaaggacaagcagaacaagt |
54728110 |
T |
|
| Q |
585 |
gaaacagtactggtttttgccatagtgtacaatat |
619 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
54728109 |
gaagcagta--gttttttgtcatagtgtgcaatat |
54728077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 54680792 - 54680708
Alignment:
| Q |
27 |
atccttcacaatgcctggtttcaaatcgagtatggaaatggttgac--atgcatgcatcaaacc-acaaattactcgagaatccgg |
109 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
54680792 |
atccttcacattgcatggtctcaaatcgagtatgg-aatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccgg |
54680708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 16 - 615
Target Start/End: Complemental strand, 5297905 - 5297310
Alignment:
| Q |
16 |
tcattgtgttcatccttcacaatgcctggtttcaaatcgagtatggaaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297905 |
tcattgtgttcatccttcacaatgcctggtttcaaatcgagtatcgaaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataa |
5297806 |
T |
|
| Q |
116 |
aatacatgatatcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaagg |
215 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297805 |
agtaca-gatatcatcacacatacacacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaagg |
5297707 |
T |
|
| Q |
216 |
atttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297706 |
atttcagcgttagggttaccgctcttagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccac |
5297607 |
T |
|
| Q |
316 |
ataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297606 |
ataacttattatagttaatacaaatgatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagc |
5297507 |
T |
|
| Q |
416 |
ttcatctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagtaccagcttcatctttcaccagttgattagctctt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5297506 |
ttcatctttcactagtaattgattaactcttccatcac---cctcagcagcagcactattcagagtaccagattcatctttcaccagttgattagctctt |
5297410 |
T |
|
| Q |
516 |
acttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtaca |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297409 |
acttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaactagaacaagtgaaacagtactggtttttgccatagtgtaca |
5297310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 619
Target Start/End: Complemental strand, 5302868 - 5302739
Alignment:
| Q |
485 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
584 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| |||||| ||||||||||||||| || |||||||||| |||||||||| ||||||||| |
|
|
| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacccacagcag---cactatagccattcacaaataatgccacaacaaggacaagcagaacaagt |
5302772 |
T |
|
| Q |
585 |
gaaacagtactggtttttgccatagtgtacaatat |
619 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
5302771 |
gaagcagta--gttttttgtcatagtgtgcaatat |
5302739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5293353 - 5293310
Alignment:
| Q |
16 |
tcattgtgttcatccttcacaatgcctggtttcaaatcgagtat |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5293353 |
tcattgtgttcatccttcacaatgcctggtttcgaatcgagtat |
5293310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
174 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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