View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_low_12 (Length: 442)
Name: NF19795_low_12
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 216 - 434
Target Start/End: Complemental strand, 32305422 - 32305203
Alignment:
| Q |
216 |
tagaacaagatatctcattcttagagagttattctagcctagtatattttcaannnnnnnatcttatgctctcgactactaattgtttagttctctattg |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32305422 |
tagaataagatatctcattcttagagagttattctagcctagtatattttcaatttttttatcttatgctctcgactattaattgtttagttctctattg |
32305323 |
T |
|
| Q |
316 |
tttgtaatatagtattacaaatttattgg-atcttcttccaattaatatgtatcatacatatttctcaccattctcattaatattgatttgtaaaatact |
414 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32305322 |
tttgtaatatagtattacaaatttattgggaccttcttccaattaatatgtatcatacatatttctcaccattctcattaatattgatttgtaaaatact |
32305223 |
T |
|
| Q |
415 |
ttcaactgaatcttcttctc |
434 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
32305222 |
ttcaactgaatcttcatctc |
32305203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 32305624 - 32305532
Alignment:
| Q |
18 |
ttcagatcatgtataattcaaaacgaaaacaaaaatacaagtgttatctttaaaattggaaatttgaaacagttttatataacatatttataa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32305624 |
ttcagatcatgtataattcaaaacgaaaacaaaaatacaagtgttatctttaaaattggaaatttgaaacagttttatataacatatttataa |
32305532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 32318454 - 32318576
Alignment:
| Q |
320 |
taatatagtattacaaatttattgg-atcttcttccaattaatatgtatcatac-------atatttctcaccattctcattaatattgatttgtaaaat |
411 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
32318454 |
taatatagtattacaaatttattgggaccttcttccaattaatatgtatcatacattatacatatttctgaccattctcattaatattgacttgtaaaat |
32318553 |
T |
|
| Q |
412 |
actttcaactgaatcttcttctc |
434 |
Q |
| |
|
||||| |||||||| ||| |||| |
|
|
| T |
32318554 |
actttgaactgaatattcatctc |
32318576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 360 - 434
Target Start/End: Original strand, 32365548 - 32365622
Alignment:
| Q |
360 |
atatgtatcatacatatttctcaccattctcattaatattgatttgtaaaatactttcaactgaatcttcttctc |
434 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32365548 |
atatgtatcatttatatttctcaccattctcattaatattgatttgtaaaatactttcaactgaatcttcatctc |
32365622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University