View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_low_13 (Length: 428)
Name: NF19795_low_13
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 161 - 375
Target Start/End: Complemental strand, 9877698 - 9877484
Alignment:
| Q |
161 |
tttaccgaagacacgaatggtgggtctggtccatgggatgtgtttatcgaggtaattgaaccatttccatgattgttctgaaggtattaacctctgaatc |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9877698 |
tttaccgaagacacgaatagtgggtctggtccatgggatgtgtttatcgaggtaattgaaccatttccatgattgttctgaaggtattaatctctgaatg |
9877599 |
T |
|
| Q |
261 |
aatacgacgtcgcttccgttaccgagatcaatagtctcagatttctttgcggtttcgttagggtttggttctgacaccgcctttagcttcaaggtgctca |
360 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9877598 |
aatacgacgtcgcttccatttccgagatcaatagtctcagatttctttgcggtttcgttagggtttggttctgacaccgcctttagcttcaaggtgctca |
9877499 |
T |
|
| Q |
361 |
ttgatgacgatgatg |
375 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
9877498 |
ttgatgatgatgatg |
9877484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 9877834 - 9877769
Alignment:
| Q |
19 |
tcattatctaatataacttgggctattatattctaatggacctatcttaattcatacaccgagagc |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9877834 |
tcattatctaatataacttgggctattatattctaatggacctatcttaattcatacaccgagagc |
9877769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 9877479 - 9877440
Alignment:
| Q |
362 |
tgatgacgatgatgccattgtagtagaatgttcattactt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9877479 |
tgatgacgatgatgccattgtagtagaatgttcattactt |
9877440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 22620894 - 22620940
Alignment:
| Q |
25 |
tctaatataacttgggctattatattctaatggacctatcttaattcat |
73 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620894 |
tctaatataac--gggctattatattctaatggacctatcttaattcat |
22620940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University