View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_low_17 (Length: 371)
Name: NF19795_low_17
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 7726590 - 7726238
Alignment:
| Q |
1 |
aattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaattcgggcaatgattaatgtgtttgcaaca |
100 |
Q |
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| T |
7726590 |
aattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaattcgggcaatgattaatgtgtttgcaaca |
7726491 |
T |
|
| Q |
101 |
caaaataatttgttgttttaattgaatcacaattaatagactatgttcaagggagttgaagtagagtatggtgaagtttaatatcatcccttagtgtagc |
200 |
Q |
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| T |
7726490 |
caaaataatttgttgttttaattgaatcacaattaatagactatgttcaagggagttgaagtagagtatggtgaagtttaatttcatcccttagtgtagc |
7726391 |
T |
|
| Q |
201 |
ctctatgaaataagtttctgcacaagttcaatttttcttagtttggatgtggttattgagaccttctctttgtgcagaagataaacaagagtgcaattat |
300 |
Q |
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| T |
7726390 |
ctctatgaaataagtttctgcacaagttcaatttttcttagttttgatctgattattgagaccttctctttgtgcagaagataaacaagagtgcaattat |
7726291 |
T |
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| Q |
301 |
ccatttctaagagttaatttggtcatggggtggggatattgaccccacatctt |
353 |
Q |
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| T |
7726290 |
ccatttctaagagttaatttggtcatggggtggggatattgaccccacatctt |
7726238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 77 - 323
Target Start/End: Complemental strand, 7738717 - 7738466
Alignment:
| Q |
77 |
gcaatgattaatgtgtttgcaacacaaaataatttgttgttttaattgaatcacaattaata-------gactatgttcaagggagttgaagtagagtat |
169 |
Q |
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| T |
7738717 |
gcaatgattattgtgtttgcaacgtaaaataattagttgtcttaattgagtcacagttaatacttaatagactatgttaaggggagttggagtagagtat |
7738618 |
T |
|
| Q |
170 |
ggtgaagtttaatatcatcccttagtgtagcctctatgaaataagtttctgcacaagttcaatttttcttagtttggatgtggttattgagaccttctct |
269 |
Q |
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| T |
7738617 |
agtgaagtttaatttcaggccttagtgtaacctctatgcattaagtttctgcgcaagttcagattttgttcctttggatgtggttattgagac--tatct |
7738520 |
T |
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| Q |
270 |
ttgtgcagaagataaacaagagtgcaattatccatttctaagagttaatttggt |
323 |
Q |
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| T |
7738519 |
ctgtgcaaaatataaacaagaatgtagttatcagcttctaagtgttaatttggt |
7738466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 7739094 - 7739015
Alignment:
| Q |
1 |
aattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaattcgggcaa |
80 |
Q |
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| T |
7739094 |
aattctgatgatgtttttgcgacttgagactttgctcgattagagacctttggactagtgcgaagtttaaatttgggcaa |
7739015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1094903 - 1094975
Alignment:
| Q |
1 |
aattctgatgatgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaatt |
73 |
Q |
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|||| |||||||||||||||||||||||||||| | ||||||| |||||| ||| ||||| ||||| |||||| |
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| T |
1094903 |
aattttgatgatgttttggcgacttgagacttttcacgattagcgaccttaggactagtgagaagtgtaaatt |
1094975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 7736853 - 7736741
Alignment:
| Q |
78 |
caatgattaatgtgtttgcaacacaaaataatttgttgttttaattgaatcac--------aattaatagactatgttcaagggagttgaagtagagtat |
169 |
Q |
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| T |
7736853 |
caatgattattgtgtttgcaacgtaaaataatttgttgtcttaattgagtcacagttaaatacttaatagactatgttcaggggagttagagtagagtac |
7736754 |
T |
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| Q |
170 |
ggtgaagtttaat |
182 |
Q |
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|||||||||||| |
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| T |
7736753 |
agtgaagtttaat |
7736741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 7736737 - 7736616
Alignment:
| Q |
200 |
cctctatgaaataagtttctgcacaagttcaatttttcttagtttggatgtggttattgagaccttctctttgtgcagaagataaacaagagtgcaatta |
299 |
Q |
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|||||||| | ||| ||||||| |||||||| |||| || ||||||||||||||||||||| | ||| |||||| || |||||| ||| || | ||| |
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| T |
7736737 |
cctctatgcattaactttctgcgcaagttcagatttttttcttttggatgtggttattgagac--tatctctgtgcaaaatataaactagaatgtagtta |
7736640 |
T |
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| Q |
300 |
tccatttctaagagttaatttggt |
323 |
Q |
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| T |
7736639 |
tcagcttctaagtgttaatttggt |
7736616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 9891997 - 9891935
Alignment:
| Q |
11 |
atgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaatt |
73 |
Q |
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||||||||||||||||||||||| | ||||||||||| || ||| ||||| ||||| |||||| |
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| T |
9891997 |
atgttttggcgacttgagacttttcacgattagagacgttaggactagtgagaagtgtaaatt |
9891935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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