View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_low_2 (Length: 670)
Name: NF19795_low_2
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Complemental strand, 54721727 - 54721085
Alignment:
| Q |
19 |
ctggtttcaaatcgagtatggaaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaaatacatgatatcatcacacataca |
118 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
54721727 |
ctggtttcgaatcgagtatggaaatggttgacatgcgtgcatcaaaccacaaattactcgagaatccggcaataaaataca-gatatcatcacacataca |
54721629 |
T |
|
| Q |
119 |
cacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721628 |
cacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctct |
54721529 |
T |
|
| Q |
219 |
tagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721528 |
tagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaat |
54721429 |
T |
|
| Q |
319 |
gatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgatta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721428 |
gatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgatta |
54721329 |
T |
|
| Q |
419 |
actcttccatcaccctcctcagcagcagaactattcagagtaccagcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactat |
518 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721328 |
actcttccatcac---cctcagcagcagcactattcagagtaccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactat |
54721232 |
T |
|
| Q |
519 |
agccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtacaatatctatcagtaactttatttcct |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54721231 |
agccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtacaatatctatcagtaactttatttcct |
54721132 |
T |
|
| Q |
619 |
tcctatcgttattgttttgcatggaataaaataggcttcatctcact |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
54721131 |
tcctatcgttattgttttgcatggaataaaataggcttcatatcact |
54721085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 368 - 665
Target Start/End: Complemental strand, 54714450 - 54714165
Alignment:
| Q |
368 |
tcatcatcatcatgaagctgatcagcttca---tctttcactagtaattgattaactcttccatcaccctcctcagcagcagaactattcagagtaccag |
464 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||| || ||||||||||||||||||||| | |||||||| ||||||||| |||||| |
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|
| T |
54714450 |
tcatcatcatcatcatgctgatcagcttcaatatctttcaccggt---tgattaactcttccatcacccccggcagcagca---ctattcagaataccag |
54714357 |
T |
|
| Q |
465 |
cttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagtga |
564 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || ||| |
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|
| T |
54714356 |
cttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattga |
54714257 |
T |
|
| Q |
565 |
aacagtactggtttttgccatagtgtacaatatctatcagtaactttatttccttcctatcgttattgttttgcatggaataaaataggcttcatctcac |
664 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
54714256 |
a---------gtttttgccatagtgtacaatatcactcagtatttttattttcttcctatcgttattgttttgcatggaataaaataggcttcatatcac |
54714166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 54714802 - 54714572
Alignment:
| Q |
19 |
ctggtttcaaatcgagtatggaaatggttgacatgcatgcatcaaacca-caaattactcgagaatccggcaataaaatacatg-----atatcatcaca |
112 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || |
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|
| T |
54714802 |
ctggtctcaaatcgagtatggaa-tggttgacatgcacgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatatcaatatcatctca |
54714704 |
T |
|
| Q |
113 |
catacacacatttatttgat-------------acatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
199 |
Q |
| |
|
|||| ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
54714703 |
cataaacacatttatttgatttgatatatatatatatagatagatagatataaataacacacaaaccatggccgcaatctctgatcatggaaggatttca |
54714604 |
T |
|
| Q |
200 |
gcgttagggttaccgctcttagccacaatgga |
231 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
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|
| T |
54714603 |
gcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 597
Target Start/End: Complemental strand, 54728205 - 54728077
Alignment:
| Q |
463 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
562 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| ||||| ||||||||||||||| || ||||||||| |||||||||| ||||||||| |
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|
| T |
54728205 |
agcttcatctttctccagttgattatctcttcccacacccgcagcaa---cactatagccattcacaaa-aatgccacaacaaggacaagcagaacaagt |
54728110 |
T |
|
| Q |
563 |
gaaacagtactggtttttgccatagtgtacaatat |
597 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
54728109 |
gaagcagta--gttttttgtcatagtgtgcaatat |
54728077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 54680777 - 54680708
Alignment:
| Q |
20 |
tggtttcaaatcgagtatggaaatggttgac--atgcatgcatcaaacc-acaaattactcgagaatccgg |
87 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
54680777 |
tggtctcaaatcgagtatgg-aatgattgacatatgcatgcatcaaaccaacaaatcactcgagaatccgg |
54680708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 593
Target Start/End: Complemental strand, 5297880 - 5297310
Alignment:
| Q |
19 |
ctggtttcaaatcgagtatggaaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaaatacatgatatcatcacacataca |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
5297880 |
ctggtttcaaatcgagtatcgaaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaagtaca-gatatcatcacacataca |
5297782 |
T |
|
| Q |
119 |
cacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297781 |
cacatttatttgatacatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctct |
5297682 |
T |
|
| Q |
219 |
tagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297681 |
tagccacaatggattcggtatgtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaat |
5297582 |
T |
|
| Q |
319 |
gatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgatta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297581 |
gatgaaaataagttttattattatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgatta |
5297482 |
T |
|
| Q |
419 |
actcttccatcaccctcctcagcagcagaactattcagagtaccagcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactat |
518 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297481 |
actcttccatcac---cctcagcagcagcactattcagagtaccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagcactat |
5297385 |
T |
|
| Q |
519 |
agccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtaca |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5297384 |
agccattcagaattaatgccacagcaaggacaactagaacaagtgaaacagtactggtttttgccatagtgtaca |
5297310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 463 - 597
Target Start/End: Complemental strand, 5302868 - 5302739
Alignment:
| Q |
463 |
agcttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
562 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||||| |||||| ||||||||||||||| || |||||||||| |||||||||| ||||||||| |
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|
| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacccacagcag---cactatagccattcacaaataatgccacaacaaggacaagcagaacaagt |
5302772 |
T |
|
| Q |
563 |
gaaacagtactggtttttgccatagtgtacaatat |
597 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||| |
|
|
| T |
5302771 |
gaagcagta--gttttttgtcatagtgtgcaatat |
5302739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
152 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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