View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_low_20 (Length: 360)
Name: NF19795_low_20
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_20 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0015 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 68126 - 68449
Alignment:
| Q |
22 |
atataattgtagaattgacattgaaatgggttgacagcgtcgtttatatcttgttataggtattgttcttgattctggagatggtgtcagccacacagtt |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68126 |
atataattgtagccttgacattgaaatgggttgacagcgtcgtttatatcttgttataggtattgttcttgattctggagatggtgtcagccacacagtt |
68225 |
T |
|
| Q |
122 |
cctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggtcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtg |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68226 |
cctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggtcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtg |
68325 |
T |
|
| Q |
222 |
gatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaactatcctacattgctcttgattatgaacaagagttagaaacctc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68326 |
gatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaactatcctacattgctcttgattatgaacaagagttagaaacctc |
68425 |
T |
|
| Q |
322 |
gaagacgagctcagctgttgagaa |
345 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
68426 |
gaagacgagctcagctgttgagaa |
68449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 345
Target Start/End: Complemental strand, 37050807 - 37050540
Alignment:
| Q |
78 |
taggtattgttcttgattctggagatggtgtcagccacacagttcctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcagg |
177 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
37050807 |
taggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcagg |
37050708 |
T |
|
| Q |
178 |
tcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaa |
277 |
Q |
| |
|
|||||||||||| || || | ||||| || |||||||||||||| ||| |||||||||| |||| ||||| ||||| || || || ||||||| ||| |
|
|
| T |
37050707 |
tcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaa |
37050608 |
T |
|
| Q |
278 |
ctatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaa |
345 |
Q |
| |
|
| | || |||||||||||||| || || ||||| ||||| | || || ||||||||||||||||| |
|
|
| T |
37050607 |
ttggcttatattgctcttgattacgagcaggagttggaaactgctaaaactagctcagctgttgagaa |
37050540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 310
Target Start/End: Original strand, 8689568 - 8689799
Alignment:
| Q |
79 |
aggtattgttcttgattctggagatggtgtcagccacacagttcctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggt |
178 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||| || || |||||||| || |||||||||||||| || ||||| ||| | ||||| || ||| |
|
|
| T |
8689568 |
aggtattgtgttggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggt |
8689667 |
T |
|
| Q |
179 |
cgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaac |
278 |
Q |
| |
|
||||| || || || | | ||||| || || || || ||||| || ||||| ||||| |||| ||||| ||||| || | |||||||| ||||| | |
|
|
| T |
8689668 |
cgtgaccttaccgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgttcgtgacgtgaaagaaaagc |
8689767 |
T |
|
| Q |
279 |
tatcctacattgctcttgattatgaacaagag |
310 |
Q |
| |
|
| || |||||||| ||||| ||||| |||||| |
|
|
| T |
8689768 |
tttcatacattgcccttgactatgagcaagag |
8689799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 79 - 345
Target Start/End: Original strand, 41388147 - 41388413
Alignment:
| Q |
79 |
aggtattgttcttgattctggagatggtgtcagccacacagttcctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggt |
178 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| || || |||||||||||||||||||||||||| || ||||| ||| | ||| | ||||| |
|
|
| T |
41388147 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
41388246 |
T |
|
| Q |
179 |
cgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaac |
278 |
Q |
| |
|
||||| ||||| || ||| | ||||||||| | ||||||||||| || |||||||| || ||||||||||||||||| || ||||| ||||||||||| | |
|
|
| T |
41388247 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
41388346 |
T |
|
| Q |
279 |
tatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaa |
345 |
Q |
| |
|
| || || ||||| ||||||| ||| |||||| | ||||| || || || || || ||||||||||| |
|
|
| T |
41388347 |
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaa |
41388413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 1262472 - 1262366
Alignment:
| Q |
78 |
taggtattgttcttgattctggagatggtgtcagccacacagttcctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcagg |
177 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || |||||||| || || |||||||| ||||| ||||| || ||||| || || ||||||||||| || |
|
|
| T |
1262472 |
taggtattgtgcttgattctggtgatggtgtgagtcacacagtgcccatatacgaagggtatgctcttccccatgcaattcttcggttggatcttgctgg |
1262373 |
T |
|
| Q |
178 |
tcgtgat |
184 |
Q |
| |
|
|||||| |
|
|
| T |
1262372 |
gcgtgat |
1262366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 333
Target Start/End: Complemental strand, 59625 - 59371
Alignment:
| Q |
79 |
aggtattgttcttgattctggagatggtgtcagccacacagttcctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggt |
178 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||| ||| | ||| | || ||| |
|
|
| T |
59625 |
aggtattgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggt |
59526 |
T |
|
| Q |
179 |
cgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaac |
278 |
Q |
| |
|
||||| || || || | | |||||||| | || || ||||| || ||||| ||||| |||| ||||||||||| ||||| || |||||||||| | |
|
|
| T |
59525 |
cgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagc |
59426 |
T |
|
| Q |
279 |
tatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctc |
333 |
Q |
| |
|
| | |||||||| ||||| ||||| |||||| |||| || || ||||| ||||| |
|
|
| T |
59425 |
tggcttacattgcccttgactatgagcaagagctagagacatccaagaccagctc |
59371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 43647493 - 43647385
Alignment:
| Q |
78 |
taggtattgttcttgattctggagatggtgtcagccacacagttcctatctacgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcagg |
177 |
Q |
| |
|
|||||||||| | |||||||| || ||||| || ||||| || || ||||| || || ||||| || ||||| || ||||| |||||||||||||| || |
|
|
| T |
43647493 |
taggtattgtgttggattctggtgacggtgtgagtcacactgtgccaatctatgagggttatgcactcccacatgccatccttcgtttggatcttgctgg |
43647394 |
T |
|
| Q |
178 |
tcgtgatct |
186 |
Q |
| |
|
||||||||| |
|
|
| T |
43647393 |
tcgtgatct |
43647385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University