View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_low_24 (Length: 297)
Name: NF19795_low_24
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 38998569 - 38998288
Alignment:
| Q |
1 |
gaaagaagaaaaattcgcaaacaaagacaaggaatgcaagaaggaaaggagcatagaagtaacaaagtttggacaagtttttaattctccattagggaat |
100 |
Q |
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| T |
38998569 |
gaaagaagaaaaattcgcaaacaaagacaaggaatgcaagaaggaaaggagcatagaagtaacaaagtttggacaagtttttaattctccattagggaat |
38998470 |
T |
|
| Q |
101 |
attaatcttgaagctgaggaatgtgctatgcagaagcaaatagtggatatgtatatgaggagcatgcaacaatttaccgagtccttggcgaaaatgaagc |
200 |
Q |
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| T |
38998469 |
attaatcttgaagctgaggaatgtgctatgcagaagcaaatagtggatatgtatatgaggagcatgcaacagtttaccgagtccttggcgaaaatgaagc |
38998370 |
T |
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| Q |
201 |
ttcctatggacgttgacaaacccgaaagacaagatcatagcggtgatgtgatttcaaatcatgagaacaagaagttagaaat |
282 |
Q |
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| T |
38998369 |
ttcctatggacgttgacaaacccgaaagacaagatcatagcggtgatgtgatttcaaatcatgagaacaagaagttagaaat |
38998288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 41226463 - 41226515
Alignment:
| Q |
164 |
atgcaacaatttaccgagtccttggcgaaaatgaagcttcctatggacgttga |
216 |
Q |
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| T |
41226463 |
atgcagcaatttaccgagtcattagcaaaaatgaagcttcctatggactttga |
41226515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 22228358 - 22228405
Alignment:
| Q |
164 |
atgcaacaatttaccgagtccttggcgaaaatgaagcttcctatggac |
211 |
Q |
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| T |
22228358 |
atgcagcaatttaccgagtcattagcgaaaatgaagcttcctatggac |
22228405 |
T |
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