View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_low_25 (Length: 290)
Name: NF19795_low_25
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 29754619 - 29754368
Alignment:
| Q |
20 |
tattagctatcaatatgtagtagactcaatcatctcaacaaacaattgtatattgaatggttttaacattttaatgtaatgattcaagttttttgacatg |
119 |
Q |
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| T |
29754619 |
tattagctatcaatatgtagtagactcaatcatctcaacaaacaattgtatattgaatggttttaacattttaatgtaatgattcaagttttttgacatg |
29754520 |
T |
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| Q |
120 |
taatattcttgacatgtttgattacttcttgaggttcttcaataagtaagtacttgaattattatgagagatgatgagaggagtaaataacatccat--- |
216 |
Q |
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| T |
29754519 |
t----------------ttgattacttcttgaggtccttcaataagtaagtacttgaattattatgagagatgatgagaggagtaaataacatccattga |
29754436 |
T |
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| Q |
217 |
-tttaatccaactttcaaaaggcacgctaattaatttttgtcaacacacgcgcttgtgattcttctct |
283 |
Q |
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| T |
29754435 |
atttaatccaactttcaaaaggcacgctaattaatttttgtcaacacacgcgcttgtgattcttctct |
29754368 |
T |
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