View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19795_low_26 (Length: 274)

Name: NF19795_low_26
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19795_low_26
NF19795_low_26
[»] chr1 (11 HSPs)
chr1 (1-264)||(21411653-21411916)
chr1 (4-263)||(22190261-22190520)
chr1 (70-146)||(32351857-32351933)
chr1 (79-149)||(25503547-25503617)
chr1 (124-266)||(39431685-39431827)
chr1 (52-192)||(5810054-5810194)
chr1 (130-192)||(20797133-20797195)
chr1 (64-149)||(5498530-5498615)
chr1 (33-109)||(47621583-47621659)
chr1 (196-233)||(19043555-19043592)
chr1 (211-248)||(43943163-43943200)
[»] chr7 (5 HSPs)
chr7 (4-264)||(17056930-17057190)
chr7 (20-149)||(13441574-13441703)
chr7 (82-149)||(45994092-45994159)
chr7 (61-149)||(33795612-33795700)
chr7 (7-86)||(43573120-43573199)
[»] chr2 (10 HSPs)
chr2 (19-236)||(4221433-4221650)
chr2 (97-240)||(2206394-2206537)
chr2 (70-243)||(6724198-6724371)
chr2 (97-171)||(35489331-35489405)
chr2 (130-251)||(9667611-9667732)
chr2 (70-243)||(13417081-13417254)
chr2 (111-171)||(6824867-6824927)
chr2 (199-245)||(21580471-21580517)
chr2 (130-183)||(11230241-11230294)
chr2 (81-149)||(22724056-22724124)
[»] chr4 (10 HSPs)
chr4 (4-243)||(54685828-54686067)
chr4 (94-243)||(40689489-40689638)
chr4 (20-149)||(20676551-20676680)
chr4 (79-171)||(8936568-8936661)
chr4 (94-243)||(19161739-19161888)
chr4 (79-149)||(19649211-19649281)
chr4 (31-167)||(26695426-26695562)
chr4 (32-242)||(5258043-5258253)
chr4 (130-243)||(19308192-19308305)
chr4 (4-104)||(6448817-6448917)
[»] chr5 (5 HSPs)
chr5 (35-248)||(27164605-27164818)
chr5 (67-243)||(36257197-36257373)
chr5 (7-248)||(30508505-30508746)
chr5 (7-248)||(30548848-30549089)
chr5 (61-254)||(25855975-25856168)
[»] chr8 (6 HSPs)
chr8 (19-176)||(36158642-36158799)
chr8 (70-177)||(16374648-16374755)
chr8 (79-171)||(4986619-4986711)
chr8 (118-192)||(6902393-6902467)
chr8 (76-192)||(6246556-6246672)
chr8 (130-181)||(43247140-43247191)
[»] chr6 (7 HSPs)
chr6 (64-149)||(15675348-15675433)
chr6 (130-242)||(18589758-18589870)
chr6 (31-167)||(21550344-21550480)
chr6 (64-149)||(26206848-26206933)
chr6 (35-104)||(14685519-14685588)
chr6 (70-171)||(15955528-15955629)
chr6 (130-254)||(1307272-1307396)
[»] scaffold0112 (1 HSPs)
scaffold0112 (59-170)||(14200-14311)
[»] chr3 (4 HSPs)
chr3 (70-150)||(34830908-34830988)
chr3 (194-242)||(52906711-52906759)
chr3 (130-176)||(11757614-11757660)
chr3 (130-171)||(29547495-29547536)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 21411916 - 21411653
Alignment:
Q  1 ttagttattggaagtgtgatttctgagtcacagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgagg 100  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21411916 ttagttattggaagtgtaatttctgagtctcagtctgcttttgtaagagatagacagatccttgatggcattcttattgctaatgaaattgtcgatgagg 21411817  T
Q  101 ctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21411816 ctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaagcttacgactctgttgattggtgttaccttgatacggttatggctagaat 21411717  T
Q  201 gggctttccgactttgtggaggaaatggattaaggaatgtgttggtacagcaacggcgtctgtg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  21411716 gggctttccgactttgtggaggaaatggattaaggaatgtgtttgtacagcaacaacgtctgtg 21411653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 22190261 - 22190520
Alignment:
Q  4 gttattggaagtgtgatttctgagtcacagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctc 103  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  22190261 gttattggaagtgtaatttctgagtcacagtctgcttttgttagagacagacagatccttgatggcattcttattgctaatgaaatagtcgatgaggctc 22190360  T
Q  104 gtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatggg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22190361 gtaacagtaaaaaagagcttatgttatttaaggttgattttgaaaaggcttacgactctgttgattggtgttatcttgatacggttatggctagaatggg 22190460  T
Q  204 ctttccgactttgtggaggaaatggattaaggaatgtgttggtacagcaacggcgtctgt 263  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||    
T  22190461 ctttccgactttgtggaggaaatggattaaggaatgtgtttgcacagcaacaacgtctgt 22190520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 32351857 - 32351933
Alignment:
Q  70 attcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttga 146  Q
    ||||| |||||||| |||||||||||||| ||| |||||  |||||||||||||||||| |||||||| ||||||||    
T  32351857 attctaattgctaacgaaattgtcgatgaagcttgtaaatctaaaaaagagcttatgttgtttaaggtggattttga 32351933  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 25503547 - 25503617
Alignment:
Q  79 gctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||||||  |||| ||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||    
T  25503547 gctaatgaggttgtagatgaggctcgtaaaaagaaaaaagaacttatgttatttaaagttgattttgaaaa 25503617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 39431827 - 39431685
Alignment:
Q  124 atgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggagga 223  Q
    ||||| ||||| || |||||||||||  |||| ||||||||||||||| |||||||||||  |||||||    | |||| ||||||   | ||||||| |    
T  39431827 atgttgtttaaagtggattttgaaaaggcttatgactctgttgattggggttaccttgatgaggttatgaagtgcatggcctttcctgttctgtggagca 39431728  T
Q  224 aatggattaaggaatgtgttggtacagcaacggcgtctgtgct 266  Q
    |||||||||  ||||||||||| ||||| || || ||||||||    
T  39431727 aatggattagagaatgtgttggcacagccacagcttctgtgct 39431685  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 5810194 - 5810054
Alignment:
Q  52 agacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaa 151  Q
    ||||||||| | ||||| ||| | |||||||||||| | || ||||||||||| || | |||||| ||  | ||||| ||||| |||||||||||||||     
T  5810194 agacagatcttagacgggattttgattgctaatgaagtggtagatgaggctcgaaagaataaaaaggaattaatgttgtttaaagttgattttgaaaaag 5810095  T
Q  152 cttacgactctgttgattggtgttaccttgatacggttatg 192  Q
    |||  ||||| ||  ||||| | || |||||||||||||||    
T  5810094 cttttgactcggtgaattggggatatcttgatacggttatg 5810054  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 20797195 - 20797133
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatg 192  Q
    ||||| || |||||||||||  |||||||||||||||||||| |||||||||||  |||||||    
T  20797195 tttaaagtggattttgaaaaggcttacgactctgttgattggggttaccttgatgaggttatg 20797133  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 5498615 - 5498530
Alignment:
Q  64 gacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||| ||||| ||||||||||||  ||||||| | ||  |||||  |||||||||||||||||| |||||||| || ||||||||    
T  5498615 gacggtattctgattgctaatgaagctgtcgataaagcatgtaaatttaaaaaagagcttatgttgtttaaggtggactttgaaaa 5498530  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 47621583 - 47621659
Alignment:
Q  33 gtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaa 109  Q
    |||||| ||||| ||||||||||| || ||||| || ||||| || ||||||||  |||||||||||||||| ||||    
T  47621583 gtctgcgtttgttagagatagacaaattcttgatggaattctgatagctaatgaggttgtcgatgaggctcgaaaaa 47621659  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 19043592 - 19043555
Alignment:
Q  196 agaatgggctttccgactttgtggaggaaatggattaa 233  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  19043592 agaatggggtttctgactttgtggaggaaatggattaa 19043555  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 43943163 - 43943200
Alignment:
Q  211 actttgtggaggaaatggattaaggaatgtgttggtac 248  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  43943163 actttgtggcggaaatggattaaagaatgtgttggtac 43943200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 17057190 - 17056930
Alignment:
Q  4 gttattggaagtgtgatttctgagtcacagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctc 103  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  17057190 gttattggaagtgtaatttctgagtcacagtctgcttttgttaaagacagacagatccttgatggcattcttattgctaatgaaatagtcgatgaggctc 17057091  T
Q  104 gtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatggg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17057090 gtaagagtaaaaaagagcttatgttatttaaggttgattttgaaaaagcttacgactctgttgtttggtgttaccttgatacggttatggctagaatggg 17056991  T
Q  204 ctttccgactttgtggaggaaatggattaaggaatgtgttggtacagcaacggcgtctgtg 264  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  17056990 ctttccgactttgtggaggaaatggattaaggaatgtgtttgtacagcaacagcgtctgtg 17056930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 13441703 - 13441574
Alignment:
Q  20 tttctgagtcacagtctgcttttgt-aagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaag 118  Q
    |||| ||||| ||||| |||||||| |||| ||||||| ||| | || || ||||| |||||||| ||| |||||||||| ||| |||||  ||||||||    
T  13441703 tttcagagtctcagtcggcttttgtcaaga-atagacaaatcttggatggtattctgattgctaacgaagttgtcgatgaagcttgtaaatctaaaaaag 13441605  T
Q  119 agcttatgttatttaaggttgattttgaaaa 149  Q
    |||||||||| |||||||| |||||||||||    
T  13441604 agcttatgttgtttaaggtggattttgaaaa 13441574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 45994159 - 45994092
Alignment:
Q  82 aatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    |||||| |||| ||||||||||||||||  |||||||| |||||||| ||||| || |||||||||||    
T  45994159 aatgaagttgttgatgaggctcgtaaaaagaaaaaagaacttatgttgtttaaagtggattttgaaaa 45994092  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 33795612 - 33795700
Alignment:
Q  61 cttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||| || ||||| || ||||||||  |||||||||||||||| ||||  || ||||| |||||||| ||||| |  |||||||||||    
T  33795612 cttgatgggattctgatagctaatgaggttgtcgatgaggctcgaaaaaagaacaaagaccttatgttgtttaaagcggattttgaaaa 33795700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 43573199 - 43573120
Alignment:
Q  7 attggaagtgtgatttctgagtcacagtctgctttt-gtaagagatagacagatccttgacggcattcttattgctaatga 86  Q
    ||||| ||||||||||||||  ||||||||||||||  ||||| |||||||||| ||||| || |||||||| || |||||    
T  43573199 attggtagtgtgatttctgaaacacagtctgcttttattaaga-atagacagattcttgatggtattcttatagccaatga 43573120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 4221433 - 4221650
Alignment:
Q  19 atttctgagtcacagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaag 118  Q
    |||||||| ||||||||||||||||| |||||  | ||||| |||||||| |||||| | || || | |||||| ||||||||  ||||| ||| |||||    
T  4221433 atttctgattcacagtctgcttttgtgagagaccgtcagattcttgacggaattcttgtggcaaacggaattgttgatgaggcctgtaaatgtagaaaag 4221532  T
Q  119 agcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtg 218  Q
    | |||||||||||||| ||||||||||||||| | || || |||||||| ||| ||||||||||| || | |  | | ||||||| |||||||| || ||    
T  4221533 atcttatgttatttaaagttgattttgaaaaagcatatgaatctgttgactggggttaccttgatgcgatcactggtcgaatgggttttccgacgttatg 4221632  T
Q  219 gaggaaatggattaagga 236  Q
    |||||| |||||||||||    
T  4221633 gaggaagtggattaagga 4221650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 2206394 - 2206537
Alignment:
Q  97 gaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggcta 196  Q
    ||||||||||||| |||||||||  |  || | |||||||| |||||||| ||| | ||||| |||||||||| | |||| |||||| |||| |||||||    
T  2206394 gaggctcgtaaaaataaaaaagatttgctgatgtttaaggtggattttgagaaagcgtacgattctgttgattagggttatcttgatgcggtgatggcta 2206493  T
Q  197 gaatgggctttccgactttgtggaggaaatggattaaggaatgt 240  Q
     |||||| |||||||| || |||||||||||||| || ||||||    
T  2206494 aaatggggtttccgacgttatggaggaaatggatcaaagaatgt 2206537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 6724198 - 6724371
Alignment:
Q  70 attcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgatt 169  Q
    ||||| ||||| ||||| ||||| |||||||||||||||| |||||| ||  |  || | ||||| || |||||||| ||| | ||||| ||||||||||    
T  6724198 attctgattgcgaatgagattgtggatgaggctcgtaaaaataaaaaggaattgttgatgtttaaagtggattttgagaaagcgtacgattctgttgatt 6724297  T
Q  170 ggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgtt 243  Q
    || ||||  | ||| |||| ||||| | |||||| |||||||| || ||||| ||||||||||| |||||||||    
T  6724298 ggggttatttagatgcggtgatggccaaaatgggttttccgacattatggagaaaatggattaaagaatgtgtt 6724371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 35489405 - 35489331
Alignment:
Q  97 gaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattgg 171  Q
    ||||||||||||  |||||| |||||||||||||| || || |||||||||||| | || |||||||||||||||    
T  35489405 gaggctcgtaaatttaaaaaggagcttatgttattcaaagtggattttgaaaaagcatatgactctgttgattgg 35489331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 9667611 - 9667732
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatgga 229  Q
    ||||| || |||||||||||  |||||||||| ||||||||| |||||||||||  |||||||    | |||  ||||||   | |||||||||||||||    
T  9667611 tttaaagtggattttgaaaaggcttacgactcagttgattggggttaccttgatgaggttatgaagtgcatgccctttcctgttctgtggaggaaatgga 9667710  T
Q  230 ttaaggaatgtgttggtacagc 251  Q
    |||  ||||||||||| |||||    
T  9667711 ttagcgaatgtgttggcacagc 9667732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 13417254 - 13417081
Alignment:
Q  70 attcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgatt 169  Q
    ||||| ||||| |||||  |||| |||||||||||||| | |||||| ||  || || | ||||| || |||||||| ||| | ||| | | ||||||||    
T  13417254 attctgattgcgaatgaggttgtggatgaggctcgtaagactaaaaaggaaattttgatgtttaaagtggattttgagaaagcgtacaattatgttgatt 13417155  T
Q  170 ggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgtt 243  Q
    || ||||  | ||  |||| ||||| | |||| | |||||||| |||||||| ||||||||||| |||||||||    
T  13417154 ggggttatttagacgcggtgatggccaaaatgtgttttccgacattgtggagaaaatggattaaagaatgtgtt 13417081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 6824927 - 6824867
Alignment:
Q  111 taaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattgg 171  Q
    |||||||||| ||||| | ||||| ||||||||||||||| |||| ||||| |||||||||    
T  6824927 taaaaaagagtttatgctttttaaagttgattttgaaaaagcttatgactcggttgattgg 6824867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 21580517 - 21580471
Alignment:
Q  199 atgggctttccgactttgtggaggaaatggattaaggaatgtgttgg 245  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||||||    
T  21580517 atggggtttccgactttgtggcgcaaatggattaaggagtgtgttgg 21580471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 11230241 - 11230294
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgat 183  Q
    ||||| || |||||||||||  |||||||||| ||||||||| |||||||||||    
T  11230241 tttaaagtagattttgaaaaggcttacgactccgttgattggggttaccttgat 11230294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 22724056 - 22724124
Alignment:
Q  81 taatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||||| |||| ||||||||||| ||||  |||||||| |||||||| || || || |||||||||||    
T  22724056 taatgaagttgttgatgaggctcgcaaaaagaaaaaagaccttatgttgttcaaagtggattttgaaaa 22724124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 54686067 - 54685828
Alignment:
Q  4 gttattggaagtgtgatttctgagtcacagtctgcttttgt-aagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggct 102  Q
    |||||||| ||||| ||||||||  | |||||||| ||||| |||| ||||||| |||||||| || ||||| ||||| |||||  | || |||||||||    
T  54686067 gttattggtagtgttatttctgatacgcagtctgcgtttgttaaga-atagacaaatccttgatgggattctgattgcgaatgaggtggttgatgaggct 54685969  T
Q  103 cgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgg 202  Q
    |||||| |||| |||||| | ||| | |||||||| |||||||| ||| |||| || | |||| ||||| | || || ||| |||| ||||  | ||||     
T  54685968 cgtaaatgtaagaaagagatgatgatgtttaaggtggattttgagaaagcttatgattttgttcattgggggtatctggattcggtgatgggaaaaatgt 54685869  T
Q  203 gctttccgactttgtggaggaaatggattaaggaatgtgtt 243  Q
    | ||||||||||| ||||| |||||||||||||||||||||    
T  54685868 gttttccgactttatggagaaaatggattaaggaatgtgtt 54685828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 243
Target Start/End: Complemental strand, 40689638 - 40689489
Alignment:
Q  94 gatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatgg 193  Q
    |||||||||||||||| |||||| ||  |  || | |||||||| |||||||| ||| | ||||| |||||||||||| ||||  | ||| |||| ||||    
T  40689638 gatgaggctcgtaaaaataaaaaggaattgttgatgtttaaggtggattttgagaaagcgtacgattctgttgattggggttatttagatgcggtgatgg 40689539  T
Q  194 ctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgtt 243  Q
    ||| |||||| |||||||| || ||||| ||||||||||| |||||||||    
T  40689538 ctaaaatgggttttccgacattatggagaaaatggattaaagaatgtgtt 40689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 20676680 - 20676551
Alignment:
Q  20 tttctgagtcacagtctgcttttgt-aagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaag 118  Q
    |||| ||||| ||||| |||||||| |||| ||||||| ||  | ||||| ||||| |||||||| ||| |||||||||| ||| |||||  ||||||||    
T  20676680 tttcagagtctcagtcggcttttgtcaaga-atagacaaattttggacggtattctgattgctaacgaagttgtcgatgacgcttgtaaatctaaaaaag 20676582  T
Q  119 agcttatgttatttaaggttgattttgaaaa 149  Q
    |||||||||| |||||||| || ||||||||    
T  20676581 agcttatgttgtttaaggtagactttgaaaa 20676551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 8936661 - 8936568
Alignment:
Q  79 gctaatgaaattgtcgatgaggctcgtaaaa-gtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattgg 171  Q
    ||||||||  ||||||||||||||||||||| | |||||||| |||||||||||||| || |||||||||||  | || ||||| |||||||||    
T  8936661 gctaatgaggttgtcgatgaggctcgtaaaaagaaaaaaagaccttatgttatttaaagtggattttgaaaaggcatatgactcggttgattgg 8936568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 19161739 - 19161888
Alignment:
Q  94 gatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatgg 193  Q
    |||||||||||||||| |||||| ||  |  || | ||||| || |||||||| ||| | ||||| || ||||||||| ||||  | ||| |||| ||||    
T  19161739 gatgaggctcgtaaaaataaaaaggaattgttgatgtttaaagtggattttgagaaagcgtacgattcggttgattggggttatttagatgcggtgatgg 19161838  T
Q  194 ctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgtt 243  Q
    ||| |||||| ||||||||||| ||||| |||||||| || |||||||||    
T  19161839 ctaaaatgggatttccgactttatggagaaaatggatcaaagaatgtgtt 19161888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 19649281 - 19649211
Alignment:
Q  79 gctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||||||  |||||||||||||||||||||  |||||||| |||||||| ||||| || |||||||||||    
T  19649281 gctaatgaggttgtcgatgaggctcgtaaaaagaaaaaagaacttatgttgtttaaagtggattttgaaaa 19649211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 26695562 - 26695426
Alignment:
Q  31 cagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttat 130  Q
    |||||||||||||| | | || | || || |||||||| || |||||||| |||||  | || ||||||||||||||   |||||| ||||| |||||||    
T  26695562 cagtctgcttttgttaaaaatcgccaaattcttgacggtatccttattgcaaatgaggtagttgatgaggctcgtaaggataaaaaggagctcatgttat 26695463  T
Q  131 ttaaggttgattttgaaaaaacttacgactctgttga 167  Q
    |||| || |||||||||||| | || || ||||||||    
T  26695462 ttaaagtggattttgaaaaagcatatgattctgttga 26695426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 5258043 - 5258253
Alignment:
Q  32 agtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatt 131  Q
    ||||||| ||||| | | ||||||| || ||||| || ||||| ||||| |||||  |||| |||||  ||| ||| | ||| |||||| | ||||| ||    
T  5258043 agtctgcctttgttaaaaatagacaaatacttgatggaattctgattgcgaatgaggttgttgatgaaactcataagactaagaaagagttgatgttgtt 5258142  T
Q  132 taaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatggatt 231  Q
    |||||| || ||||| ||||| || || || ||||| |||   || |||||| |||| |||| || |||| | ||||||||||| ||||| || |||||     
T  5258143 taaggtagagtttgagaaaacatatgattcagttgactgggagtatcttgattcggtgatggataaaatgtgttttccgactttatggagaaagtggatc 5258242  T
Q  232 aaggaatgtgt 242  Q
    |||||||||||    
T  5258243 aaggaatgtgt 5258253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 19308192 - 19308305
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatgga 229  Q
    ||||| ||||||||||||||| | || ||||| || |||||| | || || |||   |||||||  | |||||  |||||||| |||||| |||||||||    
T  19308192 tttaaagttgattttgaaaaagcatatgactcagtagattggggatatctcgatgatgttatgggcaaaatggcttttccgacattgtggcggaaatgga 19308291  T
Q  230 ttaaggaatgtgtt 243  Q
    | ||||||||||||    
T  19308292 tgaaggaatgtgtt 19308305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 6448917 - 6448817
Alignment:
Q  4 gttattggaagtgtgatttctgagtcacagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctc 103  Q
    |||||||| ||||||||||||||  | | |||  ||||||| | ||| ||||| |||||||| |  |||||| ||||||||||||| || | ||||||||    
T  6448917 gttattggtagtgtgatttctgaaactcggtcaacttttgtgaaagacagacatatccttgatgaaattcttgttgctaatgaaatagttggtgaggctc 6448818  T
Q  104 g 104  Q
    |    
T  6448817 g 6448817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 248
Target Start/End: Original strand, 27164605 - 27164818
Alignment:
Q  35 ctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaa 134  Q
    |||||||||| | | ||||| | || ||||| || ||||| || ||||||||  | ||||||||||| | ||||  ||| ||||| |||||||| || ||    
T  27164605 ctgcttttgttaaaaatagaaaaattcttgatggaattctaatagctaatgaggtggtcgatgaggcacataaatctaagaaagatcttatgttgttcaa 27164704  T
Q  135 ggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatggattaag 234  Q
     || || ||||||||  |||||||||||||||||||| | ||||| |||  |||||||| ||| |||   |||||||||||||||||||| ||||||||     
T  27164705 agtggactttgaaaaggcttacgactctgttgattgggggtacctagatgaggttatgggtagtatgtcttttccgactttgtggaggaagtggattaaa 27164804  T
Q  235 gaatgtgttggtac 248  Q
    || |||||| ||||    
T  27164805 gagtgtgtttgtac 27164818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 36257373 - 36257197
Alignment:
Q  67 ggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttg 166  Q
    |||||||| ||||| |||||  |||| |||||||||||||||| ||| || ||  |  || | |||||||| |||||||| ||| | || || |||||||    
T  36257373 ggcattctgattgcgaatgaggttgtggatgaggctcgtaaaaataagaaggaattgttgatgtttaaggtggattttgagaaagcgtatgattctgttg 36257274  T
Q  167 attggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgtt 243  Q
    ||||| ||||  | ||| |||| ||||||| |||||| |||||||| || ||||| |||||||| || || ||||||    
T  36257273 attggggttatttagatgcggtgatggctaaaatgggttttccgacattatggagaaaatggatcaaagagtgtgtt 36257197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 30508505 - 30508746
Alignment:
Q  7 attggaagtgtgatttctgagtcacagtctgcttttgt-aagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgt 105  Q
    ||||| ||||||||||||||  | |||||||||||| | |||| |||||||||| ||||| || |||||||| || |||||  | || ||||| |||       
T  30508505 attggtagtgtgatttctgaaactcagtctgcttttattaaga-atagacagattcttgatggtattcttatagccaatgaggtggtggatgaagctaaa 30508603  T
Q  106 aaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggct 205  Q
    ||   ||| ||||| |||||||| |||||||| ||||| |||||| | |||||||||||||| |||  |||| | ||| |||||||||  ||||||   |    
T  30508604 aagtttaagaaagatcttatgttgtttaaggtggatttcgaaaaagcgtacgactctgttgagtgggattacttggattcggttatggaaagaatgtcgt 30508703  T
Q  206 ttccgactttgtggaggaaatggattaaggaatgtgttggtac 248  Q
    ||||    || ||||||||||||||||  |||||||| |||||    
T  30508704 ttcctgtcttatggaggaaatggattagagaatgtgtgggtac 30508746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 30548848 - 30549089
Alignment:
Q  7 attggaagtgtgatttctgagtcacagtctgcttttgt-aagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgt 105  Q
    ||||| ||||||||||||||  | |||||||||||| | |||| |||||||||| ||||| || |||||||| || |||||  | || ||||| |||       
T  30548848 attggtagtgtgatttctgaaactcagtctgcttttattaaga-atagacagattcttgatggtattcttatagccaatgaggtggtggatgaagctaaa 30548946  T
Q  106 aaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggct 205  Q
    ||   ||| ||||| |||||||| |||||||| ||||| |||||| | |||||||||||||| |||  |||| | ||| |||||||||  ||||||   |    
T  30548947 aagtttaagaaagatcttatgttgtttaaggtggatttcgaaaaagcgtacgactctgttgagtgggattacttggattcggttatggaaagaatgtcgt 30549046  T
Q  206 ttccgactttgtggaggaaatggattaaggaatgtgttggtac 248  Q
    ||||    || ||||||||||||||||  |||||||| |||||    
T  30549047 ttcctgtcttatggaggaaatggattagagaatgtgtgggtac 30549089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 254
Target Start/End: Original strand, 25855975 - 25856168
Alignment:
Q  61 cttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgact 160  Q
    ||||| |||||||| || ||||||||  | || ||||||||||||||   ||| ||||| ||  |||| ||||| || |||||||| ||  | || ||||    
T  25855975 cttgatggcattctgatagctaatgaggtggttgatgaggctcgtaagtctaagaaagatctgttgttgtttaaagtggattttgagaaggcgtatgact 25856074  T
Q  161 ctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgttggtacagcaac 254  Q
    | ||||||||| | || |||||   |||||||| ||| |||   ||||| || || ||||| |||||||| |||||||||||| ||||||||||    
T  25856075 cagttgattgggggtatcttgaggaggttatggttaggatgtcgtttccaacgttatggagaaaatggatcaaggaatgtgtttgtacagcaac 25856168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 36158799 - 36158642
Alignment:
Q  19 atttctgagtcacagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaa-aaa 117  Q
    ||||| ||||| ||||| || ||||| | | ||||||| || |||||||| |||||||| ||||||||  |||| ||||| ||||  |||| |||| |||    
T  36158799 atttcggagtctcagtcagcgtttgttaaaaatagacaaattcttgacggtattcttatagctaatgaggttgtggatgaagctca-aaaattaaagaaa 36158701  T
Q  118 gagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgtta 176  Q
    || |||||||| |||||||| |||||||||||  |||| ||||||||||||||| ||||    
T  36158700 gatcttatgttgtttaaggtggattttgaaaaggcttatgactctgttgattggggtta 36158642  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 16374648 - 16374755
Alignment:
Q  70 attcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgatt 169  Q
    ||||| |||||||| ||| |||||||||| ||| |||||  |||||||||||||||||| |||||||| || |||||||| ||||| || || || ||||    
T  16374648 attctgattgctaacgaagttgtcgatgaagctagtaaatctaaaaaagagcttatgttgtttaaggtggactttgaaaagacttatgattcggtggatt 16374747  T
Q  170 ggtgttac 177  Q
    || |||||    
T  16374748 ggggttac 16374755  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 4986619 - 4986711
Alignment:
Q  79 gctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattgg 171  Q
    ||||||||  |||||||||||||||||||||  |||||||| |||||||| ||||| || |||||||||||  |||| |||||  ||||||||    
T  4986619 gctaatgaggttgtcgatgaggctcgtaaaaagaaaaaagaacttatgttgtttaaagtggattttgaaaaggcttatgactcgattgattgg 4986711  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 6902467 - 6902393
Alignment:
Q  118 gagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatg 192  Q
    ||||||||||||||||| || |||||||||||| | ||||| |||||||||||| | || ||  |||||||||||    
T  6902467 gagcttatgttatttaaagtagattttgaaaaagcctacgattctgttgattggggctatctgaatacggttatg 6902393  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 6246672 - 6246556
Alignment:
Q  76 attgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgattggtgtt 175  Q
    |||||||||||| | || ||||||||||| || | |||||| ||  | ||||| ||||| ||||||||||||||| |||  ||||| ||  ||||| | |    
T  6246672 attgctaatgaagtggtagatgaggctcgaaagaataaaaaggaattaatgttgtttaaagttgattttgaaaaagcttttgactcggtgaattggggat 6246573  T
Q  176 accttgatacggttatg 192  Q
    | |||||||||||||||    
T  6246572 atcttgatacggttatg 6246556  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 43247140 - 43247191
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttg 181  Q
    ||||| || ||||||||||| ||||||||||| ||||||||| |||||||||    
T  43247140 tttaaagtggattttgaaaagacttacgactccgttgattggggttaccttg 43247191  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 15675433 - 15675348
Alignment:
Q  64 gacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||| |||||||||||||| ||| |||||||||| ||| |||||  |||||||||||||||||| ||||| || || ||||||||    
T  15675433 gacggtattcttattgctaacgaagttgtcgatgaagcttgtaaatctaaaaaagagcttatgttgtttaaagtggactttgaaaa 15675348  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 18589870 - 18589758
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatgga 229  Q
    ||||||||||||||||||||  | |||||||| ||||||||| |||| || ||| |||| |||| || |||| ||||||| || || ||| |||||||||    
T  18589870 tttaaggttgattttgaaaaggcgtacgactcagttgattggggttatctggattcggtgatgggtaaaatgtgctttccaacgttatggcggaaatgga 18589771  T
Q  230 ttaaggaatgtgt 242  Q
    | || ||||||||    
T  18589770 taaaagaatgtgt 18589758  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 21550480 - 21550344
Alignment:
Q  31 cagtctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttat 130  Q
    |||||||||||||| | | || | || || |||||||| || |||||||||||||| ||||| ||||||||||||||   ||| || || || |||||||    
T  21550480 cagtctgcttttgttaaaaatcgccaaattcttgacggtatccttattgctaatgagattgttgatgaggctcgtaaggataagaaggaactcatgttat 21550381  T
Q  131 ttaaggttgattttgaaaaaacttacgactctgttga 167  Q
    |||| || |||||||||||| | || || ||||||||    
T  21550380 ttaaagtggattttgaaaaagcatatgattctgttga 21550344  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 26206933 - 26206848
Alignment:
Q  64 gacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaa 149  Q
    ||||| ||||| ||||||||||||  ||||||||| ||  |||||  |||||||||||||||||| |||||||| || ||||||||    
T  26206933 gacggtattctgattgctaatgaagctgtcgatgaagcatgtaaatttaaaaaagagcttatgttgtttaaggtggactttgaaaa 26206848  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 14685519 - 14685588
Alignment:
Q  35 ctgcttttgtaagagatagacagatccttgacggcattcttattgctaatgaaattgtcgatgaggctcg 104  Q
    |||||||||||| ||| ||||||||| | || |||||||| ||||| |||||| | ||||||||||||||    
T  14685519 ctgcttttgtaaaagacagacagatcttagatggcattctaattgccaatgaagtggtcgatgaggctcg 14685588  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 15955528 - 15955629
Alignment:
Q  70 attcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacgactctgttgatt 169  Q
    ||||| || ||||||||  ||||||||||||| || |||| ||| ||||| ||  ||||||| || || |||||||||||  | ||||||||| ||||||    
T  15955528 attctgatagctaatgaggttgtcgatgaggcacgaaaaactaagaaagatctcttgttattcaaagtggattttgaaaaggcgtacgactctattgatt 15955627  T
Q  170 gg 171  Q
    ||    
T  15955628 gg 15955629  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 1307272 - 1307396
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgttaccttgatacggttatggctagaatgggctttccgactttgtggaggaaatgga 229  Q
    ||||| || |||||||||||| | |  ||||| |||||||||  ||| ||||||   |||||||  | |||||| ||||| ||||||||| | || ||||    
T  1307272 tttaaagtggattttgaaaaagcgtttgactcggttgattgggattatcttgatgatgttatgggaaaaatggggtttccaactttgtggcgtaagtgga 1307371  T
Q  230 ttaaggaatgtgttggtacagcaac 254  Q
    | |||||||||||| ||||| ||||    
T  1307372 tgaaggaatgtgttagtacaacaac 1307396  T

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Target: scaffold0112 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 14200 - 14311
Alignment:
Q  59 tccttgacggcattcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaaacttacga 158  Q
    ||||||| || |||||||| || |||||  |||| |||||||||||||||  ||| || ||||||||||| ||||| || |||||||||||| |||| ||    
T  14200 tccttgatggtattcttatagcaaatgaggttgttgatgaggctcgtaaacttaagaaggagcttatgttgtttaaagtggattttgaaaaagcttatga 14299  T
Q  159 ctctgttgattg 170  Q
     || ||||||||    
T  14300 ttccgttgattg 14311  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 34830988 - 34830908
Alignment:
Q  70 attcttattgctaatgaaattgtcgatgaggctcgtaaaagtaaaaaagagcttatgttatttaaggttgattttgaaaaa 150  Q
    ||||| |||||||||||| | || ||||||||||| || | |||||||||  | ||||| ||||| |||||||||||||||    
T  34830988 attctgattgctaatgaagtggtagatgaggctcgcaagaataaaaaagaattgatgttgtttaaagttgattttgaaaaa 34830908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 52906711 - 52906759
Alignment:
Q  194 ctagaatgggctttccgactttgtggaggaaatggattaaggaatgtgt 242  Q
    |||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  52906711 ctagaatggggtttccaactttgtggaggaagtggattaaagaatgtgt 52906759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 11757614 - 11757660
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattggtgtta 176  Q
    ||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  11757614 tttaaggttgattttgaaaaggcttacgactcagttgattggggtta 11757660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 29547536 - 29547495
Alignment:
Q  130 tttaaggttgattttgaaaaaacttacgactctgttgattgg 171  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||    
T  29547536 tttaaggttgattttgagaaagcttacgactctattgattgg 29547495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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