View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19795_low_3 (Length: 659)

Name: NF19795_low_3
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19795_low_3
NF19795_low_3
[»] chr1 (1 HSPs)
chr1 (9-645)||(41623309-41623945)


Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 9 - 645
Target Start/End: Complemental strand, 41623945 - 41623309
Alignment:
Q  9 cacagaacaaaatacataagtaattaatacatgatgtatatgtaaatctttgtagaagaaacaaaccaaacaaccagaactaacaaagaaaaattataca 108  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41623945 cacacaacaaaatacataagtaattattacatgatgtatatgtaaatctttgtagaagaaacaaaccaaacaaccagaactaacaaagaaaaattataca 41623846  T
Q  109 actacttcaaagtttctcctcttggcttgatttttgctcttaaagactccttcatcacaacagtaaactccatctttccagagaaatctatcttcttccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41623845 actacttcaaagtttctcctcttggcttgatttttgctcttaaagactccttcatcacaacagtaaactccatctttccagagaaatctatcttcttccc 41623746  T
Q  209 tggtggataagcactccattcaaactcttgaaccatcctagccaacatcaaatgaatatgcacagtaccaatagccaaaccaggacaaatccttctccca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41623745 tggtggataagcactccattcaaactcttgaaccatcctagccaacatcaaatgaatatgcacagtaccaatagccaaaccaggacaaatccttctccca 41623646  T
Q  309 acaccaaatggcatcatttttactcctgtaacaccagttatatcagcttcctcatccttagaaagaaacctttcaggatcaaacttttcagggttggacc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41623645 acaccaaatggcatcatttttactcctgtaacaccagttatatcagcttcctcacccttagaaagaaacctttcaggatcaaacttttcagggttggacc 41623546  T
Q  409 ataatttagggtcctcacctatgccagctgtatatacctcaacatttgcatcaattggtatatcataacctcctaatgtggtaggttcagtaacagcatg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41623545 ataatttagggtcctcacctatgccagctgtatatacctcaacatttgcatcaattggtatatcataacctcctaatgtggtaggttcagtaacagcatg 41623446  T
Q  509 tgttagtacaaaatgtgttggtggatgcttccttaataactctttcaccacagcttgtaaataaggcattttctcaacatctttttcttctactttctta 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41623445 tgttagtacaaaatgtgttggtggatgcttccttaataactctttcaccacagcttgtaaataaggcattttctcaacatctttttcttctactttctta 41623346  T
Q  609 tctccaactatactattaatttcttgataaagttttg 645  Q
    |||||||||||||||||||||||||||||||||||||    
T  41623345 tctccaactatactattaatttcttgataaagttttg 41623309  T

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