View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_low_32 (Length: 250)
Name: NF19795_low_32
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 7426659 - 7426565
Alignment:
| Q |
134 |
atataattaagtgagaagacatgtatatatattatctttgatttagggtgaagatgtagattttgaactcagagttcaatatgaagattcttgta |
228 |
Q |
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| T |
7426659 |
atataattaagtgagaagacatgtatatatattatctttgatttagggtgaagatgtagattttgaactcagagttcaatatgaagattcttgta |
7426565 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 7427179 - 7427095
Alignment:
| Q |
16 |
atacaattagacacatcaatctcagtatgattaaagttgttattgaccaccctattgttgtgtgttaagggtgagttagaaaaagtat |
103 |
Q |
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| T |
7427179 |
atacaattagacacatcaatctcagtatgattaaagtt---attgaccaccctattgttgtgtgttaagggtgagttagaaaaagtat |
7427095 |
T |
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