View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19795_low_35 (Length: 246)

Name: NF19795_low_35
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19795_low_35
NF19795_low_35
[»] chr8 (1 HSPs)
chr8 (127-230)||(6015818-6015921)
[»] chr1 (5 HSPs)
chr1 (48-108)||(21404279-21404339)
chr1 (48-107)||(22192421-22192481)
chr1 (48-108)||(3073251-3073311)
chr1 (1-53)||(21411916-21411968)
chr1 (3-53)||(22190206-22190256)
[»] chr7 (4 HSPs)
chr7 (48-107)||(17052851-17052910)
chr7 (52-108)||(4616048-4616104)
chr7 (5-53)||(17057197-17057245)
chr7 (48-108)||(7253968-7254027)
[»] chr3 (3 HSPs)
chr3 (48-107)||(31546813-31546872)
chr3 (48-107)||(31778096-31778155)
chr3 (48-107)||(44887346-44887405)
[»] chr5 (2 HSPs)
chr5 (48-106)||(17757476-17757534)
chr5 (51-107)||(9387535-9387592)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 6015921 - 6015818
Alignment:
Q  127 tagttgtataaatatcatttgcttcnnnnnnnnttaatgttagactttagaattgaaatatcacatgtaatatgtattatatggaccttatttgacgaag 226  Q
    ||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6015921 tagttgtataaatatcatttgttttaaaaaaaattaatgttagactttagaattgaaatatcacatgtaatatgtattatatggaccttatttgacgaag 6015822  T
Q  227 tagt 230  Q
    ||||    
T  6015821 tagt 6015818  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 21404339 - 21404279
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgttc 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21404339 cacaccttgtgcttgaaatttctcttttggtttctgatatatattccatttttgcttgttc 21404279  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 22192421 - 22192481
Alignment:
Q  48 cacaccttgtgcttgaaa-tttctcttttggtttctaatatatattccatttttgcttgtt 107  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  22192421 cacaccttgtgcttgagactttctcttttggtttctaatatatattccatttttgcttgtt 22192481  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 3073311 - 3073251
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgttc 108  Q
    |||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||    
T  3073311 cacaccttgtgcttgaaatttctctttgagtttttaatatatatttcatttttgcttgttc 3073251  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21411916 - 21411968
Alignment:
Q  1 atcgcaatctattagaaagtaatttcgctaggatcttgtacatgctccacacc 53  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  21411916 atcgcaatctattagaaagtaatttcgctaggatcttatatatgctccccacc 21411968  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 22190256 - 22190206
Alignment:
Q  3 cgcaatctattagaaagtaatttcgctaggatcttgtacatgctccacacc 53  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  22190256 cgcaatctattagaaagtaatttcgcaaggatcttatacatgctccccacc 22190206  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 17052910 - 17052851
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgtt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17052910 cacaccttgtgcttgagatttctcttttggtttctaatatatattccatttttgcttgtt 17052851  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 4616048 - 4616104
Alignment:
Q  52 ccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgttc 108  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||    
T  4616048 ccttgtgcttgaaatttttctttgggtttttaatgtatattccatttttgcttgttc 4616104  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 17057197 - 17057245
Alignment:
Q  5 caatctattagaaagtaatttcgctaggatcttgtacatgctccacacc 53  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  17057197 caatctattagaaagtaatttcgcaaggatcttatacatgctccccacc 17057245  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 7254027 - 7253968
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgttc 108  Q
    ||||||||||||||||  | |||||||  |||| |||||||||||||||||||||||||||    
T  7254027 cacaccttgtgcttgatttctctctttgagttt-taatatatattccatttttgcttgttc 7253968  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 31546872 - 31546813
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgtt 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31546872 cacaccttgtgcttgaaattcctcttttggtttctaatatatattccatttttgcttgtt 31546813  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 31778155 - 31778096
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgtt 107  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  31778155 cacaccttgtgcttgagatttctcttttgatttctaatatatattccatttttgcttgtt 31778096  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 44887405 - 44887346
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgtt 107  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  44887405 cacaccttgtgcttgagatttctctttttgtttctaatatatatttcatttttgcttgtt 44887346  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 17757534 - 17757476
Alignment:
Q  48 cacaccttgtgcttgaaatttctcttttggtttctaatatatattccatttttgcttgt 106  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||  ||||||| ||||    
T  17757534 cacaccttgtgcttgaaatttctctttgggtttttaatatatattatatttttgtttgt 17757476  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 9387592 - 9387535
Alignment:
Q  51 accttgtgcttgaaatttctcttttgg-tttctaatatatattccatttttgcttgtt 107  Q
    ||||||||||||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  9387592 accttgtgcttgagacttctcttttgggtttctaatatatattcaatttttgattgtt 9387535  T

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