View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19795_low_5 (Length: 523)
Name: NF19795_low_5
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 51238021 - 51237508
Alignment:
| Q |
1 |
tgtaagcacacatgttagtttcatgtcagactctcagtgccgtacaccagacaccttcaattcaaagtgttggtcccagtacacagcttatcagacttaa |
100 |
Q |
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| T |
51238021 |
tgtaagcacacatgttagtttcatgtcagactctcagtgccgtacaccagacaccttcaattcaaagtgttggtcccagtacatagcttatcagacttaa |
51237922 |
T |
|
| Q |
101 |
gttttaaatgcatgggacagaagtctgattgtagtaaacctactcatcatttgttcttttggtggcatttgaacattagaaaaatttatggcttcaattt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
51237921 |
gttttaaatgcatgggacagaagtctgattgtagtaaacctactcatcatttgttcttttggtggcatttgaacattaggagaatttatggcttcaattt |
51237822 |
T |
|
| Q |
201 |
atgatatgttcaaatgacgcatttctgaacaattacgagttacagatttcattcacatgccttaaaagttactnnnnnnntacctgatgggctctgtatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
51237821 |
atgatatgttcaaatgacgcatttctgaacaattacgagttacagatttcattcacatgccttaaaagttgct---aaaatacctgatgggctctgtatg |
51237725 |
T |
|
| Q |
301 |
caaaatgcacaccctgtagtagaagagaatcttgattagattctctgtctgaatttcgaatggattcaagctccattgtcaatcttttcatgtacatctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51237724 |
caaaatgcacaccctgtagtagaagagaatcttgattagattctctgtctgaatttcgaatggattcaagctccattgtcaatcttttcatgtacatctt |
51237625 |
T |
|
| Q |
401 |
gacaagagtcattgaagactgctttatctgcagaaatggtgcatagctaatcaactcaattctaataagcatttcaaatgccaataggggtaatagagtc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
51237624 |
gacaagagtcattgaagactgctttatctgcagaaatggtgtatagctaatcaactcaattctaataagcatttcaaaggccaataggggtattagagtc |
51237525 |
T |
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| Q |
501 |
attgtttttcatctcac |
517 |
Q |
| |
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|||||||||||| |||| |
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| T |
51237524 |
attgtttttcatttcac |
51237508 |
T |
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