View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19795_low_7 (Length: 517)
Name: NF19795_low_7
Description: NF19795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19795_low_7 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Original strand, 3744366 - 3744865
Alignment:
| Q |
11 |
atcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaa |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3744366 |
atcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaa |
3744465 |
T |
|
| Q |
111 |
acatatgctaaatttaatcaaatacatcatatttccctctcttaatccacaattactaattcaaaatcaagaacaaagaacaagaacaatcacaatcaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3744466 |
acatatgctaaatttaatcaaatacatcatatttctctctcttaatccacaattactaattcaaaatcaaga-------acaagaacaatcaaaatcaca |
3744558 |
T |
|
| Q |
211 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctggtactc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3744559 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctagtactc |
3744658 |
T |
|
| Q |
311 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaatctgaacttgaatggttctgggcttcttaggctgagga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
3744659 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaacctgaacctgaatggttctaggtttcttaggctgagga |
3744758 |
T |
|
| Q |
411 |
ggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744759 |
ggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataa |
3744858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
364 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
408 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 365 - 517
Target Start/End: Original strand, 48302914 - 48303069
Alignment:
| Q |
365 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
464 |
Q |
| |
|
|||||||| || ||| ||||| ||| | ||||||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||| ||||||||||| |
|
|
| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
|
| Q |
465 |
acagca---tcagtattagcattctcaggaagcacaaatttcctcataaacttacc |
517 |
Q |
| |
|
||| || ||| || ||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
48303014 |
acaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttacc |
48303069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 10462434 - 10462342
Alignment:
| Q |
404 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctcaggaag |
493 |
Q |
| |
|
|||||||||||||||||||| || |||||||| | || ||||||||| || | ||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctcaggaag |
10462342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University