View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19796_high_1 (Length: 727)
Name: NF19796_high_1
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19796_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 655; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 18 - 716
Target Start/End: Complemental strand, 39296927 - 39296229
Alignment:
| Q |
18 |
cacccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296927 |
cacccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgatac |
39296828 |
T |
|
| Q |
118 |
aaattcactagataaggtaatccagcaaaatgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296827 |
aaattcactagataaggtaatccagcaaaatgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcac |
39296728 |
T |
|
| Q |
218 |
cagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacctgcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39296727 |
cagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacctgcttt |
39296628 |
T |
|
| Q |
318 |
aacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgagaatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296627 |
aacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgagaatt |
39296528 |
T |
|
| Q |
418 |
gtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttacagttaaaagaa |
517 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
39296527 |
gtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaactaggctcacaacttactgttaaaagaa |
39296428 |
T |
|
| Q |
518 |
tgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagag |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39296427 |
tgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagag |
39296328 |
T |
|
| Q |
618 |
cgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagagaata |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
39296327 |
cgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagagaata |
39296229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 717
Target Start/End: Complemental strand, 39290047 - 39289345
Alignment:
| Q |
18 |
cacccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgatac |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39290047 |
cacccaaatcaagcacacatcagccttatttttctgcaacagaaatgataagaacacacaaatcccagaacctgttgctactaaaagcactttttgatac |
39289948 |
T |
|
| Q |
118 |
aaattcactagataaggtaatccagcaaaatgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289947 |
aaattcactagataaggtaatccagcaaaatgaactgaacgaatccaaagatgtttaggaggtgaagaaactaatgattttgtaaaatcaccaactgcac |
39289848 |
T |
|
| Q |
218 |
cagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacctgcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39289847 |
cagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacctgcttt |
39289748 |
T |
|
| Q |
318 |
aacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgagaatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289747 |
aacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgagaatt |
39289648 |
T |
|
| Q |
418 |
gtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttacagttaaaagaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| || ||||||| ||| | ||||| |
|
|
| T |
39289647 |
gtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgataggtttttgaactaggttcataacttatagtaagaagaa |
39289548 |
T |
|
| Q |
518 |
tgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagag |
617 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||| || |
|
|
| T |
39289547 |
tgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaag |
39289448 |
T |
|
| Q |
618 |
cgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagagaa |
714 |
Q |
| |
|
||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| ||||||||||||| || |||||| |
|
|
| T |
39289447 |
cgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaa |
39289348 |
T |
|
| Q |
715 |
taa |
717 |
Q |
| |
|
||| |
|
|
| T |
39289347 |
taa |
39289345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University