View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19796_high_4 (Length: 493)
Name: NF19796_high_4
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19796_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 479
Target Start/End: Original strand, 40471504 - 40471963
Alignment:
| Q |
14 |
aggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtttgttgatcctaagggcaataa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40471504 |
aggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatgtgggatcagtttgttgatcctaagggcaataa |
40471603 |
T |
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| Q |
114 |
ttccagttccaacacggtttcgccgccaccgccacctcctcagtcgtcaaggaccaacagtactgtacaccccagctagctctagtttatgctattagta |
213 |
Q |
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| T |
40471604 |
ttccagttccaacacggtttcgccgc------cacctcctcagtcgtcaagggccaacagtactgtacacccgagctagctctagtctatgctattagta |
40471697 |
T |
|
| Q |
214 |
taatcaaatattcctttttcaaggtttatactattactgatctatctgcattatattgtaaaccagatacatcaataattcaataaacctgaataaggaa |
313 |
Q |
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| T |
40471698 |
ttatcaaatattcctttttcagggtttatactattactgatctatctgcattatattataaaccagatacatcaataattcaataaacgtgaataaggaa |
40471797 |
T |
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| Q |
314 |
tatttgtttatagtagtgatcggaaggagtactgaatattcatggagatgcatgctcttctattcatgattgtgttgtgtctttctcttttagttatctt |
413 |
Q |
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| T |
40471798 |
tatttgtttatagtagtgatcggaaggagtactgaatattcatcgagatgcatgctcttctattcatgattgtgttgtgtctttctcttttagttatctt |
40471897 |
T |
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| Q |
414 |
tttctccaccttctatttttgttgttctgtaaatgtagtccaccttatgaacacgagttgcttttg |
479 |
Q |
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| T |
40471898 |
tttctccaccttctatttttgttggtctgtaaatgtagtccaccttatgaacacgagttgcttttg |
40471963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 40491635 - 40491761
Alignment:
| Q |
14 |
aggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtttgttgatcctaagggcaataa |
113 |
Q |
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||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| |
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| T |
40491635 |
aggcatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgttaattacaaggg---taa |
40491731 |
T |
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| Q |
114 |
ttccagttccaacacggtttcgccgccacc |
143 |
Q |
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| T |
40491732 |
ttccagttcaaacacggtttcaccgccacc |
40491761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 40481128 - 40481248
Alignment:
| Q |
17 |
catggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtttgttgatcctaagggcaataattc |
116 |
Q |
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| T |
40481128 |
catggcacaaaccaaaaaatgggagtgtcttccctgcaaataaacgttcggtgaagaagatgatgtgggataagattgttgatcctaaggg------ttc |
40481221 |
T |
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| Q |
117 |
cagttccaacacggtttcgccgccacc |
143 |
Q |
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| T |
40481222 |
cagttcaaacacggtttcaccaccacc |
40481248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 40501578 - 40501651
Alignment:
| Q |
14 |
aggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggat |
87 |
Q |
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||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||| | |||||||||||| |
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| T |
40501578 |
aggcatggcccaaaccgaagaataagagtgtcttccctgcaaagaaacgctctgtgaagcaaatgatatgggat |
40501651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 40481279 - 40481326
Alignment:
| Q |
345 |
ctgaatattcatggagatgcatgctcttctattcatgattgtgttgtgt |
393 |
Q |
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| T |
40481279 |
ctgaatattcatggagatgcatgc-atgctatgcatgattgtgttgtgt |
40481326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 30206538 - 30206618
Alignment:
| Q |
265 |
tatattgtaaaccagatacatcaataattcaataaacctgaataa-ggaatatttgtttatagtagtgatcggaaggagta |
344 |
Q |
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| T |
30206538 |
tatattataaaccagatacatcaattattcaatgaatctgaaaaaaggaatatttgtttataatagtgaccggaaggagta |
30206618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 23471090 - 23471143
Alignment:
| Q |
272 |
taaaccagatacatcaataattcaataaacctgaataaggaatatttgtttata |
325 |
Q |
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||||| |||||||||| | ||||||| |||||||| |||||||||||| ||||| |
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| T |
23471090 |
taaacaagatacatcagttattcaatgaacctgaaaaaggaatatttgcttata |
23471143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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