View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19796_low_3 (Length: 520)

Name: NF19796_low_3
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19796_low_3
NF19796_low_3
[»] chr8 (9 HSPs)
chr8 (109-502)||(29118424-29118814)
chr8 (346-449)||(6223488-6223591)
chr8 (346-449)||(19369822-19369923)
chr8 (346-449)||(19448535-19448636)
chr8 (346-449)||(19532440-19532541)
chr8 (378-442)||(5650863-5650927)
chr8 (346-441)||(5528830-5528923)
chr8 (411-449)||(18767067-18767105)
chr8 (372-449)||(14997733-14997810)
[»] chr1 (6 HSPs)
chr1 (348-449)||(51758842-51758941)
chr1 (372-449)||(39368550-39368627)
chr1 (372-443)||(18308260-18308331)
chr1 (411-449)||(897605-897643)
chr1 (274-339)||(28636882-28636948)
chr1 (411-448)||(28637054-28637091)
[»] chr3 (2 HSPs)
chr3 (346-449)||(28745062-28745164)
chr3 (346-448)||(27259366-27259467)
[»] chr5 (5 HSPs)
chr5 (347-443)||(19985083-19985178)
chr5 (346-449)||(17037630-17037731)
chr5 (274-337)||(31571008-31571072)
chr5 (346-442)||(5078983-5079077)
chr5 (274-337)||(30786246-30786310)
[»] scaffold0069 (1 HSPs)
scaffold0069 (346-449)||(40610-40711)
[»] chr7 (5 HSPs)
chr7 (274-337)||(26619160-26619223)
chr7 (377-443)||(26619021-26619087)
chr7 (346-443)||(26621008-26621104)
chr7 (346-442)||(9242403-9242497)
chr7 (276-337)||(30089716-30089778)
[»] chr6 (5 HSPs)
chr6 (346-449)||(17719635-17719736)
chr6 (346-442)||(12591920-12592014)
chr6 (346-449)||(14669258-14669359)
chr6 (372-441)||(1942681-1942750)
chr6 (273-340)||(23904406-23904474)
[»] chr4 (3 HSPs)
chr4 (346-449)||(1152131-1152232)
chr4 (346-449)||(1684864-1684965)
chr4 (274-337)||(4923690-4923754)
[»] scaffold0684 (1 HSPs)
scaffold0684 (346-449)||(659-760)
[»] chr2 (3 HSPs)
chr2 (372-449)||(24479264-24479341)
chr2 (279-339)||(27151287-27151347)
chr2 (346-442)||(31342635-31342729)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 109 - 502
Target Start/End: Complemental strand, 29118814 - 29118424
Alignment:
Q  109 tatgcacacatatatcttgttattttaagttttaacttcatttgtctcttccatttcagttagacattcttctatatttatatgcaataatcatatcaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118814 tatgcacacatatatcttgttattttaagttttaacttcatttgtctcttccatttcagttagacattcttctatatttatatgcaataatcatatcaaa 29118715  T
Q  209 tccatttatcctttcctaaaccaaaaccaataggaacgtacatatatgattcaaattactaaaggcactacaatataattgagatctagtaacacttaaa 308  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29118714 tccatttatcctttcctaaaccaaaaccaatgggaacgtacatatatga-tccaattactaaaggcactacaatataattgagatctagtaacacttaaa 29118616  T
Q  309 attgttgctaaaccaagaagaatgttactaaacacactgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttca 408  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29118615 attgttgctaaaccaagaagaatgttactaaacacgct-atacaaaagag-tttaagtcacactttacagtattatctgtaacattcaaaacgtgttgca 29118518  T
Q  409 atatgttacatcattgtaacattttttgtatcaccagtaacttttgtatcagaaattgattcatgtaattttcttcattgaacttcccatgaac 502  Q
    | ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118517 aaatgttacatcattgtaacactttttgtatcaccggtaactttagtatcagaaattgattcatgtaattttcttcattgaacttcccatgaac 29118424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 6223488 - 6223591
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaac-gtgtttcaatatgttacatcattgtaacattttttgtatcacca 444  Q
    |||||| ||||||||||| || |||||||| | |||||| ||||||||||||||  ||||  ||| ||||||||| ||||||||| |||||| |||||||    
T  6223488 tgttactaaagagtttta-gttacactttataatattatatgtaacattcaaaaaagtgtcgcaaaatgttacattattgtaacactttttgaatcacca 6223586  T
Q  445 gtaac 449  Q
    |||||    
T  6223587 gtaac 6223591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 19369923 - 19369822
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  19369923 tgttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 19369826  T
Q  446 taac 449  Q
    ||||    
T  19369825 taac 19369822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 19448535 - 19448636
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || | | |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  19448535 tgttactaaagagtttta-gttatattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 19448632  T
Q  446 taac 449  Q
    ||||    
T  19448633 taac 19448636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 19532541 - 19532440
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || | | |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  19532541 tgttactaaagagtttta-gttatattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 19532444  T
Q  446 taac 449  Q
    ||||    
T  19532443 taac 19532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 5650927 - 5650863
Alignment:
Q  378 gtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 442  Q
    ||||||||| |||||||||||  ||||  ||| ||||||||| ||||||||| ||||||||||||    
T  5650927 gtattatctataacattcaaatagtgtcacaaaatgttacattattgtaacactttttgtatcac 5650863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 441
Target Start/End: Original strand, 5528830 - 5528923
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatca 441  Q
    |||||| ||||||||||| || ||| ||||||||||||||||||||| | |||| ||||  ||| || | |||| ||||||||| |||||||||||    
T  5528830 tgttactaaagagtttta-gttacattttacagtattatctgtaacagttaaaaagtgtcgcaa-atataacattattgtaacactttttgtatca 5528923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 18767067 - 18767105
Alignment:
Q  411 atgttacatcattgtaacattttttgtatcaccagtaac 449  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  18767067 atgttacattattgtaacattttttgtatcactagtaac 18767105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 14997733 - 14997810
Alignment:
Q  372 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagtaac 449  Q
    |||| ||||||| |||||||||||||||  |||  ||| |  |||||| ||||||||| ||||||||||||| |||||    
T  14997733 tttatagtattaactgtaacattcaaaaaatgtcgcaaaacattacattattgtaacactttttgtatcaccggtaac 14997810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 348 - 449
Target Start/End: Original strand, 51758842 - 51758941
Alignment:
Q  348 ttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagta 447  Q
    |||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||| ||| ||||||||| ||||||||| |||||||||||||||||    
T  51758842 ttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgttgcaa-atgttacattattgtaacactttttgtatcaccagta 51758939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 39368627 - 39368550
Alignment:
Q  372 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagtaac 449  Q
    |||| ||||||||| |||||||| |||| ||||  ||| ||||||||| ||||||||| ||||||||||||| |||||    
T  39368627 tttatagtattatcagtaacatttaaaaagtgtcgcaaaatgttacattattgtaacactttttgtatcaccggtaac 39368550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 443
Target Start/End: Original strand, 18308260 - 18308331
Alignment:
Q  372 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 443  Q
    |||| |||||| | |||||||||||||| ||||  ||| ||||||||| ||||||||| |||||||||||||    
T  18308260 tttatagtattgtttgtaacattcaaaaagtgtcacaaaatgttacattattgtaacactttttgtatcacc 18308331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 897605 - 897643
Alignment:
Q  411 atgttacatcattgtaacattttttgtatcaccagtaac 449  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  897605 atgttacattattgtaacactttttgtatcaccagtaac 897643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 28636882 - 28636948
Alignment:
Q  274 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttactaa 339  Q
    |||||||| |||||| ||||||||||||| || ||||||||  ||||| |||||| |||||||||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaa 28636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 28637054 - 28637091
Alignment:
Q  411 atgttacatcattgtaacattttttgtatcaccagtaa 448  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  28637054 atgttacattattgtaacactttttgtatcaccagtaa 28637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 28745062 - 28745164
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||| |||||||||||||| ||||  ||| || |||||| ||||||||| ||||||||||| |||    
T  28745062 tgttactaaagagtttta-gttacattttagagtattatttgtaacattcaaaaagtgtcgcaaaattttacattattgtaacactttttgtatcatcag 28745160  T
Q  446 taac 449  Q
    ||||    
T  28745161 taac 28745164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 448
Target Start/End: Complemental strand, 27259467 - 27259366
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| |||||| |||| || ||| |||| ||||||||||||||||||||||| ||||   || ||||||||| ||||||||| ||||||||||||| |    
T  27259467 tgttactaaagagcttta-gttacattttagagtattatctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcacctg 27259369  T
Q  446 taa 448  Q
    |||    
T  27259368 taa 27259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 443
Target Start/End: Original strand, 19985083 - 19985178
Alignment:
Q  347 gttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 443  Q
    ||||| ||||||||||| || ||| |||| |||||||| ||||| | |||||| ||||| ||| ||||||||| ||||||||| |||||||||||||    
T  19985083 gttactaaagagtttta-gttacattttatagtattatatgtaataatcaaaaagtgttgcaaaatgttacattattgtaacactttttgtatcacc 19985178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 17037630 - 17037731
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  17037630 tgttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 17037727  T
Q  446 taac 449  Q
    ||||    
T  17037728 taac 17037731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 31571008 - 31571072
Alignment:
Q  274 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 337  Q
    |||||||| |||||||| |||||||||||||| |||||||||  |||| |||||| |||||||||    
T  31571008 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttact 31571072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 5079077 - 5078983
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 442  Q
    |||||| |||| |||||| || ||| |||| |||| ||||||||||| |||||| ||||| ||| ||| ||| | ||||||||| ||||||||||||    
T  5079077 tgttactaaagtgtttta-gttacattttatagtactatctgtaacaatcaaaaagtgttgcaa-atggtaccttattgtaacactttttgtatcac 5078983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 30786246 - 30786310
Alignment:
Q  274 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 337  Q
    |||||||| |||||| |||||||||||||||| ||||||||  || || |||||| |||||||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttact 30786310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 40711 - 40610
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| |||| |||| ||||||||| || |||||| |||||||||||| ||    
T  40711 tgttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgtctcaa-atgttacattatcgtaacactttttgtatcactag 40614  T
Q  446 taac 449  Q
    ||||    
T  40613 taac 40610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 26619223 - 26619160
Alignment:
Q  274 cactacaatataattgagatctagtaacacttaaaattgttgctaaaccaagaagaatgttact 337  Q
    |||||||| |||||||| |||||||||||||| |||||||| ||||| |||||| |||||||||    
T  26619223 cactacaacataattgacatctagtaacacttgaaattgttactaaatcaagaaaaatgttact 26619160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 26619087 - 26619021
Alignment:
Q  377 agtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 443  Q
    |||||||| |||||||||||||| ||||  ||| ||| ||||| ||||||||| |||||||||||||    
T  26619087 agtattatttgtaacattcaaaaagtgtcgcaaaatgctacattattgtaacactttttgtatcacc 26619021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 443
Target Start/End: Complemental strand, 26621104 - 26621008
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 443  Q
    |||||| |||||| |||| || ||| |||| ||||||||||||||||||||||| ||||   || ||||||||| |||| |||| || ||||||||||    
T  26621104 tgttactaaagagcttta-gttacattttatagtattatctgtaacattcaaaaagtgtcataaaatgttacattattgcaacacttgttgtatcacc 26621008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 9242497 - 9242403
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 442  Q
    |||||| ||||||||||| || ||| |||| |||||||||| ||||| | |||| ||||  ||| ||||||||| ||||||||| ||||||||||||    
T  9242497 tgttactaaagagtttta-gttacattttatagtattatctataacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcac 9242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 30089716 - 30089778
Alignment:
Q  276 ctacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 337  Q
    |||||| |||||||| |||||||||||||| |||| |||| ||||| |||||| |||||||||    
T  30089716 ctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttact 30089778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 17719736 - 17719635
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  17719736 tgttactaaagagtttta-gttacaatttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 17719639  T
Q  446 taac 449  Q
    ||||    
T  17719638 taac 17719635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 442
Target Start/End: Original strand, 12591920 - 12592014
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 442  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| ||||||||||||    
T  12591920 tgttactaaagagtttta-gttacaatttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcac 12592014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 14669359 - 14669258
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||| ||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  14669359 tgttactaaagagtttta-gttacattttatagtattatttgtaacaattaaaaagtgtcacaa-atgttacattattgtaacactttttgtatcactag 14669262  T
Q  446 taac 449  Q
    ||||    
T  14669261 taac 14669258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 1942681 - 1942750
Alignment:
Q  372 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatca 441  Q
    |||| |||||||||||||||| | ||||  |||  ||| ||||||||| |||||||||| ||||||||||    
T  1942681 tttatagtattatctgtaacaattaaaatatgtcgcaaaatgttacattattgtaacatcttttgtatca 1942750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 23904474 - 23904406
Alignment:
Q  273 gcactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttactaaa 340  Q
    |||| |||| ||||||||||||||||||||||| ||||||| | |||||  ||||| || |||||||||    
T  23904474 gcacaacaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaa 23904406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 1152131 - 1152232
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| | |||||||||||||| | |||| |||| |||| ||||||||| ||||||||| |||||||||||| ||    
T  1152131 tgttactaaagagtttta-gttacagtttataatattatctgtaacaattaaaaagtgtctcaa-atgttacattattgtaacactttttgtatcactag 1152228  T
Q  446 taac 449  Q
    ||||    
T  1152229 taac 1152232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 1684965 - 1684864
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||  ||||||||| |||||||||||| ||    
T  1684965 tgttactaaagagtttta-gttacaatttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacaatattgtaacactttttgtatcactag 1684868  T
Q  446 taac 449  Q
    ||||    
T  1684867 taac 1684864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 4923754 - 4923690
Alignment:
Q  274 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 337  Q
    |||||||| |||||| | ||| |||||||||| ||||||||| ||||| |||||| |||||||||    
T  4923754 cactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact 4923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 760 - 659
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 445  Q
    |||||| ||||||||||| || ||| |||| |||||||||| ||||| | |||| ||||  ||| ||||||||| |||| |||| |||||||||||| ||    
T  760 tgttactaaagagtttta-gttacattttatagtattatctataacaattaaaaagtgtcgcaa-atgttacattattggaacactttttgtatcactag 663  T
Q  446 taac 449  Q
    ||||    
T  662 taac 659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 24479264 - 24479341
Alignment:
Q  372 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagtaac 449  Q
    |||| |||||||||| |||||||||||| ||||   || | ||||||  |||||||||||||||||| ||||| ||||    
T  24479264 tttatagtattatctataacattcaaaaagtgtcgtaaaaggttacactattgtaacattttttgtaccaccattaac 24479341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 27151347 - 27151287
Alignment:
Q  279 caatataattgagatctagtaacacttaaaattgttgctaaaccaagaagaatgttactaa 339  Q
    |||||||||||| ||||||||| | || |||||||| ||||| |||||| ||||| |||||    
T  27151347 caatataattgacatctagtaataatttaaattgttactaaatcaagaaaaatgtcactaa 27151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 31342729 - 31342635
Alignment:
Q  346 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 442  Q
    |||||| |||| |||||| || ||| |||| |||| ||||||||||| |||||| ||||| ||| ||| ||| | ||||||||| ||||||||||||    
T  31342729 tgttactaaagtgtttta-gttacattttatagtactatctgtaacaatcaaaaagtgttgcaa-atggtaccttattgtaacactttttgtatcac 31342635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University