View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19796_low_5 (Length: 392)
Name: NF19796_low_5
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19796_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 47 - 390
Target Start/End: Complemental strand, 2212674 - 2212334
Alignment:
| Q |
47 |
taatgtttgcaattcatgtcagtagaataaaaaggtatcattaatagattaaaaaagcacagtagtttcttggacccatatttggttctgttcatatact |
146 |
Q |
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| T |
2212674 |
taatgtttgcaattcatgtcagtagaataaaaaggtatcattaatagattaaaaaagcatcgtggtttcttggacccatatttggttctgt----atact |
2212579 |
T |
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| Q |
147 |
tcagtaacaacctatagatggctaagaaaaagtactaattaaaacaaatccagtgaccggaaatctcaacaaaagactaatgcagtcaacacctctgcct |
246 |
Q |
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| T |
2212578 |
tcagtaacaacctatagatggctaagaaaaagtattaattaaaacaaatccagtgacagaaaatctcaagaaaagactaatgcagtcaacatctctgcct |
2212479 |
T |
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| Q |
247 |
ccctgcctgcacatattcaacaatgtttgccttttaaaattgcagtcctcatcactcatgatccttaaatcctttttcaacagccacatcttgtcgacaa |
346 |
Q |
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| T |
2212478 |
ccctgcctgcacatattccaaaatgtttgccttttgaaattgcagtcctcatcactcatgatccttaaatcctttttcaacagccacaccttgtctacaa |
2212379 |
T |
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| Q |
347 |
atcaaccttaaaagctccaagcaaatcaca-aaaacagttgccaa |
390 |
Q |
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| T |
2212378 |
atcaacattaaaagctccaagcaaatcacaaaaaacagttgccaa |
2212334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 128 - 392
Target Start/End: Original strand, 38852720 - 38852985
Alignment:
| Q |
128 |
ttggttctgttcatatacttcagtaacaacctatagatggctaagaaaaagtactaattaaaacaaatccagtgaccggaaatctcaacaaaagactaat |
227 |
Q |
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| T |
38852720 |
ttggttctgttcatatacttcagtaacaacttatagatggctaagaaaaagtactaattaaaacaaatccagtgacaggaaatctcaacaaaagactaat |
38852819 |
T |
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| Q |
228 |
gcagtcaacacctctgcctccctgcctgcacatattcaacaatgtttgccttttaaaattgcagtcctcatcactcatgatccttaaatcctttttcaac |
327 |
Q |
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| T |
38852820 |
gcagtcaacacctatgcctccctacctgcacatattcaacaatgtttgccttttgaaattgcagtcctcatcactcatgatccttaaatcctttttcaac |
38852919 |
T |
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| Q |
328 |
agccacatcttgtcgacaaatcaaccttaaaagctccaagcaaatcaca-aaaacagttgccaacc |
392 |
Q |
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| T |
38852920 |
agccacaccttgtctacaaatcaaccttaaaagctccaagcaaatcacagaaaacagttgccaacc |
38852985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 38852681 - 38852716
Alignment:
| Q |
200 |
tgaccggaaatctcaacaaaagactaatgcagtcaa |
235 |
Q |
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| T |
38852681 |
tgacaggaaatctcaacaaaagactaatgcagtcaa |
38852716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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