View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19796_low_6 (Length: 325)
Name: NF19796_low_6
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19796_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 46238748 - 46238454
Alignment:
| Q |
15 |
acaatagacaaacaacataacaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46238748 |
acaatagacaaacaacataacaagttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccac |
46238649 |
T |
|
| Q |
115 |
aacaagaataaacaaagaaatagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238648 |
aacaagaataaacaaagaaatagcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagct |
46238549 |
T |
|
| Q |
215 |
ccaacgtttttcataaccgtcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcacctt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238548 |
ccaacgtttttcataaccgtcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcacctt |
46238454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 3455910 - 3456204
Alignment:
| Q |
15 |
acaatagacaaacaacataacaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455910 |
acaatagacaaacaacataacaagttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccac |
3456009 |
T |
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| Q |
115 |
aacaagaataaacaaagaaatagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456010 |
aacaagaataaacaaagaaatagcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagct |
3456109 |
T |
|
| Q |
215 |
ccaacgtttttcataaccgtcgattgtccttcgatcgtttcatgcatcttcttcgcaacttcgttcgtcttctctccttctttccgcgtcacctt |
309 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3456110 |
ccaacgtttttcataaccgtcgattgcccttcgattgtttcctgcatcttcttcgcaacttcgttcgtcttctctccttctttcggcgtcacctt |
3456204 |
T |
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