View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19796_low_8 (Length: 240)
Name: NF19796_low_8
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19796_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 49952122 - 49952333
Alignment:
| Q |
6 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgcacctgcaacatagttcatcttgtgctatcgctggtggtgactg |
105 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgcacctgcaacatagttcatgttgtgatattgctggtggtgactg |
49952221 |
T |
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| Q |
106 |
ctactcatcacgtgacccacatgatattcattcattggatgctgaggaatcaaatgtgttgggaaagacactgggcgtgtaggtgaagagtacagatatg |
205 |
Q |
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| T |
49952222 |
ctactcatcacgtgacccacatgatattcattcattggatgctgaggaatcaaatgtgttgggaaagacactgggcgtgtaggtgaagagtacagatatg |
49952321 |
T |
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| Q |
206 |
gttgagatggtt |
217 |
Q |
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|||||||||||| |
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| T |
49952322 |
gttgagatggtt |
49952333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 49978932 - 49978876
Alignment:
| Q |
6 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
62 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
49978932 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
49978876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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