View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19796_low_9 (Length: 223)

Name: NF19796_low_9
Description: NF19796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19796_low_9
NF19796_low_9
[»] chr8 (3 HSPs)
chr8 (1-100)||(40978410-40978509)
chr8 (118-223)||(40977374-40977479)
chr8 (30-59)||(40981713-40981742)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40978509 - 40978410
Alignment:
Q  1 ttgcagaaaaggaaaattaactgatgcctgataatgcaagtctgattaatttacgatgccgttaaacacttgaggagagctaattaatcttgaggtacta 100  Q
    |||||||| |||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40978509 ttgcagaataggaaaattaactgatgcttgataatgtaattatgattaatttacgatgccgttaaacacttgaggagagctaattaatcttgaggtacta 40978410  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 40977479 - 40977374
Alignment:
Q  118 taaaatgaccattatgacacttgaattaattnnnnnnnnnnnnntaagtcctctttccaatatatgaaaaagaattttgagaagagaagaaaggttctgt 217  Q
    |||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40977479 taaaatgaccattatgacacttgaattaattaaaaaaaaaaaaaaaagtcctctttccaatatatgaaaaagaattttgagaagagaagaaaggttctgt 40977380  T
Q  218 tgtttt 223  Q
    ||||||    
T  40977379 tgtttt 40977374  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 40981713 - 40981742
Alignment:
Q  30 gataatgcaagtctgattaatttacgatgc 59  Q
    ||||||||||||||||||||||||||||||    
T  40981713 gataatgcaagtctgattaatttacgatgc 40981742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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