View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_high_1 (Length: 573)
Name: NF19797_high_1
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 55239315 - 55239874
Alignment:
| Q |
1 |
aattaatttcctacctaccgtaccaattcatttgttgtgtgatcccacaactagagnnnnnnnnnncttcttcattatcatgtcacaagaaaaaagacta |
100 |
Q |
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| T |
55239315 |
aattaatttcctacctaccgtaccaattcatttgttgtgtgatcccacaactagagttttttttttcttcttcattatcatgtcacaagaaaaaagacta |
55239414 |
T |
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| Q |
101 |
gtaagatggctaggtagctagctggatgaagataaaatctgcagaagaaaagaaacaaataagtggtaatcaatcacattcatatacacaactattaaat |
200 |
Q |
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| T |
55239415 |
gtaagatggctaggtagcttgctggatgaagataaaatctgcagaagaaaagaaacaaataagtggtaatcaatcacattcatatacacaactattaaat |
55239514 |
T |
|
| Q |
201 |
tatagaacttattgaagaagnnnnnnn--cctttgctatgctgcagattgctaatgaggagaaagaagctgtgcctgattaacacgtgatattggcacgg |
298 |
Q |
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| T |
55239515 |
tatagaacttgttgaagaaaaaaaaaaaacctttgctatgctgcagattgctaatgaggagaaagaagctgtgcctgattaacacgtgatattggcacgg |
55239614 |
T |
|
| Q |
299 |
ctcaatcaaataacacagagctttttgaattataaaagcactgctttctgattgaaccgcaccaatatctcatctcaactagctgtaattctcaactatn |
398 |
Q |
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| T |
55239615 |
ctcaatcaaataacacagagctttttgaattataaaagcactgccttctgattgaaccgcaccaatatctcatctcaactagctgtaattctcaactat- |
55239713 |
T |
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| Q |
399 |
nnnnnnncaaagcttgttgctcctgtcctccacttttttctgaagaaacaataacaaacctttgttaatcaatgtgagacatcaataatatgttactaga |
498 |
Q |
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| T |
55239714 |
aaaaaaacaaagcttgttgctcctgtcctccacttttttctgaagaaacaataacaaacctttgttaatcaatgtgagacatcaataatatgttactaga |
55239813 |
T |
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| Q |
499 |
atagcttaaataatatgtcaccaaaagaacatttagtactcagaaagaacgatgaaaatgt |
559 |
Q |
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| T |
55239814 |
atcgcttaaataatatgtcaccaaaagaacatttagtactcagaaagaacgatgaaaatgt |
55239874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 8261985 - 8262068
Alignment:
| Q |
284 |
gtgatattggcacggctcaatcaaataacacagagctttttgaattataaaagcactgctttctgattgaaccgcaccaatatctcat |
371 |
Q |
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| T |
8261985 |
gtgatattggcacggctcaatcaaataaga--gaacttta-gaataataaa-gcactcccttctgattgaaccgcaccaatatctcat |
8262068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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