View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19797_high_2 (Length: 538)
Name: NF19797_high_2
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 15424967 - 15425487
Alignment:
| Q |
1 |
aagatggctcaatcaaatttacaaaagtgannnnnnnnnnngaaacggaaaatattattaggctagattagcacaagattatagaaataaggatgaattc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
15424967 |
aagatggctcaatcaaattcacaaaagtgatttttttttttgaaacggcaaatattattaggctaggctagcacaagattattgaaataaggatgaattc |
15425066 |
T |
|
| Q |
101 |
tctccaatgacatgagctttagacctttgaataaaaaagagatgggagggacttttaatatgaaaagtgggagagnnnnnnnnttgaaaggtgggatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
15425067 |
tctccaatgacatgagctttagacctttgaataaaaaagagatgggagggacttttaatatgaaaaatgggagagaaaagaaattgaaaggtgggatttg |
15425166 |
T |
|
| Q |
201 |
aaagacattagagaacatgagagcaaaaatcatgaaatccattccctaagaacttatgnnnnnnntttaaatttgttcatgcaaccaacaactaagtgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15425167 |
aaagacattagagaacatgagagcaaaaatcatgaaatccattccctaagaacttacgaaaaaaatttaaatttgttcatgcaaccaacaactaagtgaa |
15425266 |
T |
|
| Q |
301 |
acggccacatgatctaatatttccctaagaaattaagaagaaaagttgagatcatgctggcagcttcacttggtagtggtccatgataataaaagaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15425267 |
acggccacatgatctaatatttccctaagaaattaagaagaaaagttgagatcatgctggcagcttcacttggtagtggtccatgataataaaagaatat |
15425366 |
T |
|
| Q |
401 |
gaactaatgctacaacttcattatggtactgagatttaaaaggttgtttaattgttagagtttggattgagaagaaagtagaacggccacccttatatat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15425367 |
gaactaatgctacaacttcattatggtactgagatttaaaaggttgtttaattgttagagtttggattgagaagaaagtagaacggccacccttatatat |
15425466 |
T |
|
| Q |
501 |
agttgttagaaagctagaact |
521 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
15425467 |
agtagttagaaagctagaact |
15425487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University