View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_low_1 (Length: 668)
Name: NF19797_low_1
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 15 - 663
Target Start/End: Original strand, 34090215 - 34090858
Alignment:
| Q |
15 |
cacagaaaacggaagaagttcttgagcagccaaaacacaaagcggcagaagaatatgagaatcagcaaagcaatcagccctacccaaaaaaccccataat |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34090215 |
cacataaaacggaagaagttcttgagcagccaaaacacaaagcggcagaagaatatgagaatcagcaaagcaatcagccctacccaaaaaatcccataat |
34090314 |
T |
|
| Q |
115 |
aaattgtgatacgataaaaggttccatcaa-gtgggttcaatatcatccaaatagaaatcacatatgcaccagctgtgcaaaacactgagagacacgtta |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34090315 |
aaattgtgatacgataaaaggttccatcaacgtgggttcaatatcatccaaatagaaatcacatatgcaccagctgtgcaaaacactgagagacacgtta |
34090414 |
T |
|
| Q |
214 |
caattatgaggaaccacataacaaacttgttacgaaggggaaatccacatattaataatacaataattgtttgagaagcagagaaagatatagtacacaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34090415 |
caattatgaggaaccacataacaaacttgttacgaaggggaaatccacatattaataatacaataattgtttgagaagcagagaaagatatagtacacaa |
34090514 |
T |
|
| Q |
314 |
cagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatcaggtgcacacccgttttga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34090515 |
cagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgcatgtttgatcaggtgcacacccgttttga |
34090614 |
T |
|
| Q |
414 |
gtatctgtgtttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcagtaactgtggctaccaccattaaggaacctctca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34090615 |
gtatctgtgtttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcaataactgtggctaccaccattaaggaacctctca |
34090714 |
T |
|
| Q |
514 |
tttgttccatccaatttccttgattgttttcatattcataccttgtgaattggttattagcccatgatcgtcctagtaatacttgttctccattctgaac |
613 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34090715 |
tttgttccatccaatttccttgattgtt------ttcataccttgtgaattggttattagcccatgatcgtcctggtaatacttgttctccattctgaac |
34090808 |
T |
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| Q |
614 |
cacaacaccctccattgtttttctagttattttttgcttaactaattgtt |
663 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34090809 |
cacaacaccctccattgtttttctagttattttttgcttaactagttgtt |
34090858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 423 - 634
Target Start/End: Original strand, 34093569 - 34093774
Alignment:
| Q |
423 |
tttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcagtaactgtggctaccaccattaaggaacctctcatttgttcca |
522 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34093569 |
tttgattgccaaacacctcctggtgggtttattgcaatttggaaagttaaggatgccataactgtggctaccaccattagggaacctctcatttgttcca |
34093668 |
T |
|
| Q |
523 |
tccaatttccttgattgttttcatattcataccttgtgaattggttattagcccatgatcgtcctagtaatacttgttctccattctgaaccacaacacc |
622 |
Q |
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||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
34093669 |
tcctatttccttgatctttttcgtat------cttgtgaattggttattagcccatgatgatcctggtaatacttgtgttccattctgaaccacaacacc |
34093762 |
T |
|
| Q |
623 |
ctccattgtttt |
634 |
Q |
| |
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|||||||||||| |
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| T |
34093763 |
ctccattgtttt |
34093774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 195 - 379
Target Start/End: Original strand, 34093369 - 34093553
Alignment:
| Q |
195 |
aacactgagagacacgttacaattatgaggaaccacataacaaacttgttacgaaggggaaatccacatattaataatacaataattgtttgagaagcag |
294 |
Q |
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||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
34093369 |
aacaccgagagacacgttacaatcatgagtaaccacataacaaacttgttacgaaggggaaatccacatattagtaacacaattattgtttgagaagcag |
34093468 |
T |
|
| Q |
295 |
agaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagc |
379 |
Q |
| |
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|||||||||||||||| ||||||| ||||| ||||||||||| ||| ||| ||| ||||||| | |||||||||||||||||||| |
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| T |
34093469 |
agaaagatatagtacataacagtataaacatttcatatctaagcttttgagtgccatcaccagatgctaaaactgaagtaccagc |
34093553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 34093225 - 34093292
Alignment:
| Q |
21 |
aaacggaagaagttcttgagcagccaaaacacaaagcggcagaagaatatgagaatcagcaaagcaat |
88 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
34093225 |
aaacggaagaacatcttgagcagccaaaacacaaagcggcagaaaaatatgagaatcagcaaaacaat |
34093292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 210 - 395
Target Start/End: Original strand, 34092518 - 34092710
Alignment:
| Q |
210 |
gttacaattatgaggaaccacataacaaacttgttacgaaggggaaatccacatattaataatacaataattgtttgagaagcagagaaag-------at |
302 |
Q |
| |
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||||||||||| ||| ||| |||||||||||||||| |||| |||||||||||| || ||| ||||| ||||| ||| |||||||||||| || |
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| T |
34092518 |
gttacaattataaggtacctcataacaaacttgttaagaagtggaaatccacatgctagtaacacaattattgtctgaaaagcagagaaagatattaaat |
34092617 |
T |
|
| Q |
303 |
atagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatca |
395 |
Q |
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|| ||||| | |||| ||| ||||||||| | | || || |||||||||||||| |||| |||| ||||||||||||||||| ||||||| |
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| T |
34092618 |
atggtacatgaaagtataaaaagttcatatattaatttttggttgctatcaccaaatgctagaactaaagtaccagctttgcatatttgatca |
34092710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 34096790 - 34096878
Alignment:
| Q |
315 |
agtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatcaggtgcaca |
403 |
Q |
| |
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|||| ||| ||||||||||||| || || |||||||||||||| ||||||||| |||||| |||||||||| ||||||| ||||||| |
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| T |
34096790 |
agtataaaaagttcatatctaaatttttggttgctatcaccaaatgctaaaactaaagtactagctttgcatatttgatcatgtgcaca |
34096878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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