View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_low_11 (Length: 269)
Name: NF19797_low_11
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 26840229 - 26840006
Alignment:
| Q |
18 |
cttctctttttcaacctctgcaaagtatagtgtctacaaagtgtctaaataattacagtatcatttttgtttattgatgcaagtatagtgtcatagtgga |
117 |
Q |
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| T |
26840229 |
cttctctttttcaacctctgcaaagtatagtgtctacaaagtgtctaaagaattacaatatcatttttgtttattggtgcaagtatagtgtcacagtgga |
26840130 |
T |
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| Q |
118 |
tctcatgatatatgtacagagtgtctaaagaagtatgtgttagtactaataggtcctctttgctattcacgttgtagtgatatcactgaaaattttcttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
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| T |
26840129 |
tctcatgatatatgtacagagtgtctaaagaagtatgtgttagtactaataggtcctctttgctattcaagttgtagtgatatcactgaaaattcacatt |
26840030 |
T |
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| Q |
218 |
ttagtgtatatctttatatttcat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
26840029 |
ttagtgtatatctttatatttcat |
26840006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 50975266 - 50975104
Alignment:
| Q |
75 |
gtatcatttttgtttattgatgcaagtatagtgtcatagtggatctcatgatatatgtacagagtgtctaaagaagtatgtgttagtactaataggtcct |
174 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50975266 |
gtatcatttttgtttattggtgcaagtatagtgtcatagtggatctcatgatatatgtgcagagtgtctaaagaagtatgtgttagtactaataggtcct |
50975167 |
T |
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| Q |
175 |
ctttgctattcacgttgtagtgatatcactgaaaattttctttttagtgtatatctttatatttc |
239 |
Q |
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| T |
50975166 |
ctttgctattcacgttgtagtgatatcactggaaattttctttt--gtgtatatctttatatttc |
50975104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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