View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19797_low_12 (Length: 261)

Name: NF19797_low_12
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19797_low_12
NF19797_low_12
[»] chr2 (1 HSPs)
chr2 (1-261)||(14785165-14785426)
[»] chr7 (3 HSPs)
chr7 (41-261)||(48898564-48898785)
chr7 (41-156)||(34184079-34184194)
chr7 (41-156)||(34204668-34204783)
[»] chr5 (3 HSPs)
chr5 (41-261)||(38061837-38062058)
chr5 (43-139)||(31116304-31116400)
chr5 (202-255)||(31116209-31116262)
[»] chr3 (8 HSPs)
chr3 (213-256)||(25661726-25661769)
chr3 (213-256)||(25668131-25668174)
chr3 (213-256)||(25674536-25674579)
chr3 (213-256)||(25681210-25681253)
chr3 (213-256)||(25689514-25689557)
chr3 (41-141)||(25660770-25660870)
chr3 (41-141)||(25667175-25667275)
chr3 (41-141)||(25673580-25673680)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 14785165 - 14785426
Alignment:
Q  1 tattaatttttgggtggataaataaacttctagtggaacttccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcc 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  14785165 tattaatttttggatggataaataaacttctactggaacttccatcactgatcaaactagtattgacacaactctatatgcgagggatgtggtaacctcc 14785264  T
Q  101 tcagaagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatg 199  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||    
T  14785265 taagaagagtgggattataagttccttacttctaacttactatgtacatttgctttacaggttcttgctatccctacacgtatagaaacaaatggatatg 14785364  T
Q  200 aaaatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctatgcttct 261  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  14785365 aaaatattggctagggaggaaccaacactagggatttcataattcaaagtgcctatgattct 14785426  T

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Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 261
Target Start/End: Complemental strand, 48898785 - 48898564
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    ||||| |||||||||| || |||||||||||||||  |||||||||||||||||||| ||| || ||||||||||| ||| |||||||||||||||||||    
T  48898785 tccattactaatcaaaatattattgacacaactctccatgtgagggacgtggtaaccccctaaggagagtgggattttaatttccttacttctaacttac 48898686  T
Q  141 tatgtacatttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcac 239  Q
      | ||| ||||||||| ||||||||||||| ||| |||||| ||| ||  ||||   ||| |||||||||| |||||||||||||||||||||||||||    
T  48898685 cgtctacctttgctttacaggttcttgctatccctgcacctaaagacactgatggacttgacaatattggttggggaggaaccaacactagggatttcac 48898586  T
Q  240 aattcaacgtgcctatgcttct 261  Q
    ||||||| ||| ||||| ||||    
T  48898585 aattcaaagtgtctatgattct 48898564  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 34184194 - 34184079
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    |||||||||||||||| |  | |||||||||| || ||||| | ||| ||||||||| | |||  ||| || |||||||| ||  |||||||||||||||    
T  34184194 tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac 34184095  T
Q  141 tatgtacatttgcttt 156  Q
     || ||| ||||||||    
T  34184094 catttacctttgcttt 34184079  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 34204783 - 34204668
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    |||||||||||||||| |  | |||||||||| || ||||| | ||| ||||||||| | |||  ||| || |||||||| ||  |||||||||||||||    
T  34204783 tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac 34204684  T
Q  141 tatgtacatttgcttt 156  Q
     || ||| ||||||||    
T  34204683 catttacctttgcttt 34204668  T

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Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 261
Target Start/End: Original strand, 38061837 - 38062058
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    ||||| ||||||||||||| |||||||| ||||||  ||||||| ||||||| |||| |||||| ||||||||||| ||| |||||||||||||||||||    
T  38061837 tccattactaatcaaactattattgacataactctccatgtgagtgacgtggcaaccccctcaggagagtgggattttaatttccttacttctaacttac 38061936  T
Q  141 tatgtacatttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcac 239  Q
      | ||| ||||||||| |||||||| |||| ||| |||||| ||| ||  ||||   ||| |||||||||| |||||||||||||||||||||||||||    
T  38061937 cgtctacctttgctttacaggttctttctatccctgcacctaaagacactgatggacttgacaatattggttggggaggaaccaacactagggatttcac 38062036  T
Q  240 aattcaacgtgcctatgcttct 261  Q
    |||| || ||| ||||| ||||    
T  38062037 aatttaaagtgtctatgattct 38062058  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 31116400 - 31116304
Alignment:
Q  43 catcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaactta 139  Q
    ||||||||||||||| |||||| |||| |||||  ||||||||||||||||| ||| ||||| ||||||||| ||||| |||||||| |||||||||    
T  31116400 catcactaatcaaacaagtatttacacgactctccatgtgagggacgtggtagccttctcaggagagtgggactataatttccttacctctaactta 31116304  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 31116262 - 31116209
Alignment:
Q  202 aatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctat 255  Q
    ||||||||||  || |||||||||||||||||||||||||||||| ||||||||    
T  31116262 aatattggttgcggtggaaccaacactagggatttcacaattcaaagtgcctat 31116209  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 25661726 - 25661769
Alignment:
Q  213 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 256  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25661726 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25661769  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 25668131 - 25668174
Alignment:
Q  213 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 256  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25668131 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25668174  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 25674536 - 25674579
Alignment:
Q  213 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 256  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25674536 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25674579  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 25681210 - 25681253
Alignment:
Q  213 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 256  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25681210 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25681253  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 25689514 - 25689557
Alignment:
Q  213 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 256  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25689514 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25689557  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 25660770 - 25660870
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25660770 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25660869  T
Q  141 t 141  Q
    |    
T  25660870 t 25660870  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 25667175 - 25667275
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25667175 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25667274  T
Q  141 t 141  Q
    |    
T  25667275 t 25667275  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 25673580 - 25673680
Alignment:
Q  41 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 140  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25673580 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25673679  T
Q  141 t 141  Q
    |    
T  25673680 t 25673680  T

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