View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_low_5 (Length: 490)
Name: NF19797_low_5
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 3426329 - 3426750
Alignment:
| Q |
16 |
acagacgacggagtgggcatgctaaaacccaaccaaatgaaatacaatgaacactccaaagattactaaccacacctactaggaccagacacatgacaag |
115 |
Q |
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| T |
3426329 |
acagacgagggagtgggcatgctaaaacccaaccaaaagaaatacaatgaacactccaaagattactaaccacacctactaggaccagacacatgacaag |
3426428 |
T |
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| Q |
116 |
aaagagtgatcatatccaagtatcaacttcatgttatgcttcaaaaatgtcaacatacatcgaggataagattacatgagcttgttggttctaaatattg |
215 |
Q |
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| T |
3426429 |
aaagagtgatcatatccaagtatcaacttcgtgttatgcttcaaaaatgtcaacatacatcgaggataagattacatgagcttgttggttctaaatattg |
3426528 |
T |
|
| Q |
216 |
tgtgttatgtaggtaaacagtttgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattctgctttaagtgatcaacaaatccta |
315 |
Q |
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| T |
3426529 |
tgtgttatgtaggtaaacagattgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattctgctttaagtgatcaacaaatccta |
3426628 |
T |
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| Q |
316 |
agcaccaaacaattattcgtttattcttgacttcattttgatagtatataatatgcacacttttgaaaacgttagaggataaaatat-ct----ttttgt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
3426629 |
agcaccaaacaattattcgtttattcttgacttcattttgatagtatataatatgcacacttttgaaaacgttagaggataaaatatgctcatattttgt |
3426728 |
T |
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| Q |
411 |
tatcatcaaaattcgaagataa |
432 |
Q |
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| T |
3426729 |
tatcatcaaaattcgaagataa |
3426750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 474
Target Start/End: Original strand, 3426767 - 3426800
Alignment:
| Q |
441 |
ttgaatctaaccatattaacatggtatacattca |
474 |
Q |
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| T |
3426767 |
ttgaatctaaccatattaacatggtatacattca |
3426800 |
T |
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