View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_low_7 (Length: 365)
Name: NF19797_low_7
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_low_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 365
Target Start/End: Original strand, 25010979 - 25011341
Alignment:
| Q |
3 |
ccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatcatctagtcagttg |
102 |
Q |
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| T |
25010979 |
ccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtcatctagtcagttg |
25011078 |
T |
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| Q |
103 |
cagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagcggtgcggtgagtttca |
202 |
Q |
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| T |
25011079 |
caaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtgcggtgagtttca |
25011178 |
T |
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| Q |
203 |
gtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactcatgacagtctaat |
302 |
Q |
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| T |
25011179 |
gtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactcatgacagtctaat |
25011278 |
T |
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| Q |
303 |
cacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaa |
365 |
Q |
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| T |
25011279 |
cacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaa |
25011341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
| Q |
250 |
aatgatcattttacaattgtcccatataggatttgaactc |
289 |
Q |
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| T |
4752802 |
aatgatcattttacaactgttccatataggatttgaactc |
4752841 |
T |
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