View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_low_8 (Length: 359)
Name: NF19797_low_8
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 5522534 - 5522213
Alignment:
| Q |
18 |
atgaaacaaaaacaacatagaagtaaagaatagtagatataattttaattcaaaataaatacgattataactttaaataaattattctttcnnnnnnnnn |
117 |
Q |
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| T |
5522534 |
atgaaacaaaaacaacatagaagtaaagaatagtagatataattttaatttaaaataaatatgattataactttaaataaattattctttcaaacaaaaa |
5522435 |
T |
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| Q |
118 |
nnnctttaaataaattattttatctatatgtggacctgggccaaatggatcacatgtgaaaaccttatttatgtgatcgatcatgtctggaaaccannnn |
217 |
Q |
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| T |
5522434 |
aaactttaaataaattattttatctatacgtggacttgtgccaaatggatcacatgcgaaaaccttatttatgtgatcggtcatgtgtggaaaccatttt |
5522335 |
T |
|
| Q |
218 |
nnnnatcggatagtttagtggttaaattcaacacattatatgtggagaagtggagaactcatgattcaaactccagctcctacacgtaatgtctttggtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5522334 |
ttt-atcggatagtttagtggttaaattcaacacattatatgtggagaagtggagaactcatgattcaaaccccagctcctacacgtaatgtctttggtt |
5522236 |
T |
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| Q |
318 |
accaagttgagctacacttacat |
340 |
Q |
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| T |
5522235 |
accaagttgagctacacttacat |
5522213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 42657616 - 42657569
Alignment:
| Q |
228 |
tagtttagtggttaaattca-acacattatatgtggagaagtggagaa |
274 |
Q |
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| T |
42657616 |
tagtttagtggttaaattcacacacattatgtgtgaagaagtggagaa |
42657569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 27744693 - 27744649
Alignment:
| Q |
227 |
atagtttagtggttaaattca-acacattatatgtggagaagtgg |
270 |
Q |
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| T |
27744693 |
atagtttagtggttaaattcacacacattatgtgtggagaagtgg |
27744649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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