View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19797_low_9 (Length: 330)
Name: NF19797_low_9
Description: NF19797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19797_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 25011388 - 25011719
Alignment:
| Q |
1 |
tggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattgcgctaagctggtgaaactagtatatctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
25011388 |
tggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagctggtgaaactagtatatctga |
25011487 |
T |
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| Q |
101 |
aa-cacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaa |
199 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011488 |
aaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaa |
25011587 |
T |
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| Q |
200 |
accgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011588 |
accgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctc |
25011687 |
T |
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| Q |
300 |
tgcctgtgtgcatcttgatgatg-tccatctc |
330 |
Q |
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||||||||||||||||||| ||| |||||||| |
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| T |
25011688 |
tgcctgtgtgcatcttgattatgatccatctc |
25011719 |
T |
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