View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_high_1 (Length: 484)
Name: NF19798_high_1
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 47076572 - 47077027
Alignment:
| Q |
1 |
tttttagtgtttcatttattatgtgcaattgtgtttttcaaatactcatggtaggacaagtatcaaggttttgacttacggaactaagttaattttatgt |
100 |
Q |
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| T |
47076572 |
tttttagtgtttcatttattatgtgcaattgtgtttttcaaatactcatggtaggacaagtatcaaggttttgacttacggaactaagttaattttgtgt |
47076671 |
T |
|
| Q |
101 |
gttttgaactatgttatccnnnnnnnnnnnnnnnnnnctgccaacactgttttcactagcattaatttgtcgtccaaaaccctgagtttgcagtagatcc |
200 |
Q |
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| T |
47076672 |
gttttgaactatgttatccgtgtgtgtgttt------ctgccaacactgttttcactagcattaatttgtcgtccaaaaccctgagtttgcagtagatcc |
47076765 |
T |
|
| Q |
201 |
agtgaattattattatgcttatttgtttcattcattttgtattcatatatgtacataagattgaagacatggtattttaatttaagtagaaaataggaaa |
300 |
Q |
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| T |
47076766 |
agtgaattattattatgcttatttgtttcattcattttgtatgcatatatgtacataatattgaagacatggtat-----tttaagtagaaaataggaaa |
47076860 |
T |
|
| Q |
301 |
aatctatctagatttggtatccacggtgcattgctgatgcatcaatcataacgaattgaatgaaagaaacaactaaaaagattcttattcattcaacaaa |
400 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
47076861 |
aatctatctagatttggtatccactgtgcattactgatgcatcaatc------------atgaaaga---aactaaaatgattcttattcattcaacaaa |
47076945 |
T |
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| Q |
401 |
aattattaataaacaatata--------------gcattcaaatgaaatgatttcatacaaactatacacagagtgttgagt |
468 |
Q |
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| T |
47076946 |
aattattaataaacaatatacataatatagcggtgcattcaaatgaaatgatttcatacaaactatacacagagtgttgagt |
47077027 |
T |
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