View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19798_high_12 (Length: 252)

Name: NF19798_high_12
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19798_high_12
NF19798_high_12
[»] chr3 (10 HSPs)
chr3 (145-242)||(27999368-27999465)
chr3 (150-189)||(11409601-11409640)
chr3 (10-53)||(50037311-50037354)
chr3 (8-42)||(20276052-20276086)
chr3 (12-54)||(46483249-46483291)
chr3 (10-43)||(20370309-20370342)
chr3 (8-53)||(53996297-53996342)
chr3 (10-42)||(15881090-15881122)
chr3 (10-54)||(27999714-27999758)
chr3 (10-54)||(52453274-52453318)
[»] chr4 (9 HSPs)
chr4 (150-226)||(9329313-9329386)
chr4 (150-226)||(9383096-9383169)
chr4 (10-53)||(36490568-36490611)
chr4 (8-53)||(16743302-16743347)
chr4 (8-53)||(19854563-19854608)
chr4 (10-43)||(39171398-39171431)
chr4 (10-43)||(43374300-43374333)
chr4 (11-43)||(9196214-9196246)
chr4 (9-53)||(20383487-20383531)
[»] chr7 (4 HSPs)
chr7 (10-53)||(31038540-31038583)
chr7 (10-54)||(35142166-35142210)
chr7 (10-53)||(41527560-41527603)
chr7 (12-43)||(44473338-44473369)
[»] chr1 (8 HSPs)
chr1 (10-53)||(16967212-16967255)
chr1 (8-53)||(32944734-32944779)
chr1 (10-52)||(43021647-43021689)
chr1 (8-53)||(8253737-8253782)
chr1 (8-53)||(13054871-13054916)
chr1 (10-43)||(29701348-29701381)
chr1 (11-43)||(13778841-13778873)
chr1 (10-42)||(26755616-26755648)
[»] chr8 (4 HSPs)
chr8 (10-53)||(10871912-10871955)
chr8 (10-53)||(27718912-27718955)
chr8 (8-53)||(30427729-30427774)
chr8 (10-43)||(44654994-44655027)
[»] chr5 (4 HSPs)
chr5 (10-53)||(24485699-24485742)
chr5 (10-53)||(39610359-39610402)
chr5 (8-53)||(10515359-10515404)
chr5 (10-43)||(22394035-22394068)
[»] chr2 (5 HSPs)
chr2 (10-53)||(33063986-33064029)
chr2 (10-43)||(9799438-9799471)
chr2 (8-53)||(29734689-29734734)
chr2 (10-43)||(41187485-41187518)
chr2 (10-43)||(41204529-41204562)
[»] scaffold1694 (1 HSPs)
scaffold1694 (15-53)||(160-198)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-43)||(244479-244512)
[»] chr6 (2 HSPs)
chr6 (10-43)||(16130765-16130798)
chr6 (6-43)||(24827048-24827085)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 27999465 - 27999368
Alignment:
Q  145 ggtataaaaataacattacagaagaaggtgagatggttaccattattgcgttgtcttgctgttgatcctcagaaaccaatgaaactttagtatctgtg 242  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  27999465 ggtataaaaataacattacataagaaggtgagatggttaccattattacgttctcttgttgttgatcctcagaaaccaatggaactttagtatttgtg 27999368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 11409640 - 11409601
Alignment:
Q  150 aaaaataacattacagaagaaggtgagatggttaccatta 189  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  11409640 aaaaataacatcacagaagaaggtgagagggttaccatta 11409601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 50037311 - 50037354
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||    
T  50037311 gtgagcttagctcagttggtatggacaatgcataatgtatgcaa 50037354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 20276052 - 20276086
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcat 42  Q
    ||||||| |||||||||||||||||||||||||||    
T  20276052 ttgtgagtttagcttagttgatatggacaatgcat 20276086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 46483249 - 46483291
Alignment:
Q  12 gagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    |||||||||||||||| ||||||||||||||| | ||||||||    
T  46483249 gagcttagcttagttggtatggacaatgcataatatatgcaaa 46483291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 20370342 - 20370309
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  20370342 gtgagcttagctcagttgatatggacaatgcata 20370309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 53996297 - 53996342
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  53996297 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 53996342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 15881090 - 15881122
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcat 42  Q
    |||||||||||| ||||||||||||||||||||    
T  15881090 gtgagcttagctaagttgatatggacaatgcat 15881122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 27999758 - 27999714
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    |||||||||||| ||||| |||||| ||||| |||||||||||||    
T  27999758 gtgagcttagctcagttggtatggataatgcgtattgtatgcaaa 27999714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 52453318 - 52453274
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    ||||||||||||||||| ||| |||||||||||| | ||||||||    
T  52453318 gtgagcttagcttagttaatagggacaatgcataatatatgcaaa 52453274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 9329313 - 9329386
Alignment:
Q  150 aaaaataacattacagaagaaggtgagatggttaccattattgcgttgtcttgctgttgatcctcagaaaccaatga 226  Q
    ||||||||||| |||||||||||| ||| ||||||||||||   |||||| ||| ||||||||||||||||||||||    
T  9329313 aaaaataacatcacagaagaaggtaagagggttaccattat---gttgtcctgcggttgatcctcagaaaccaatga 9329386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 9383096 - 9383169
Alignment:
Q  150 aaaaataacattacagaagaaggtgagatggttaccattattgcgttgtcttgctgttgatcctcagaaaccaatga 226  Q
    ||||||||||| |||||||||||| ||| ||||||||||||   |||||| ||| ||||||||||||||||||||||    
T  9383096 aaaaataacatcacagaagaaggtaagagggttaccattat---gttgtcctgcggttgatcctcagaaaccaatga 9383169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36490568 - 36490611
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||    
T  36490568 gtgagcttaacttagttggtatggacaatgcataatgtatgcaa 36490611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 16743347 - 16743302
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| |||||||||||| |||||||| | |||||||    
T  16743347 ttgtgagcttagctcagttgatatggataatgcataatatatgcaa 16743302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 19854563 - 19854608
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  19854563 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 19854608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 39171431 - 39171398
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  39171431 gtgagcttagctcagttgatatggacaatgcata 39171398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 43374333 - 43374300
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  43374333 gtgagcttagctcagttgatatggacaatgcata 43374300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 9196214 - 9196246
Alignment:
Q  11 tgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||| ||||||||||||||||||||||||    
T  9196214 tgagcttaacttagttgatatggacaatgcata 9196246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 20383487 - 20383531
Alignment:
Q  9 tgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||||||||| ||||| ||||||||||||||| | |||||||    
T  20383487 tgtgagcttagctcagttggtatggacaatgcataatatatgcaa 20383531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 31038583 - 31038540
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  31038583 gtgagcttagctcagttggtatggacaatgcatattgtatgcaa 31038540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 35142210 - 35142166
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||    
T  35142210 gtgagcttagctcagttgatatggacaatgcataatatatgcaaa 35142166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 41527560 - 41527603
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||| ||||||||||||||| | |||||||    
T  41527560 gtgagcttagcttagttggtatggacaatgcataatatatgcaa 41527603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 44473369 - 44473338
Alignment:
Q  12 gagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||||||||||||||||||||||||||    
T  44473369 gagcttagcttagttgatatggacaatgcata 44473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 16967255 - 16967212
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  16967255 gtgagcttagcttagttgatatggacaatgcataatatatgcaa 16967212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 32944734 - 32944779
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||    
T  32944734 ttgtgagcttagcttagttggtatggacaatgcataatatatgcaa 32944779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 43021689 - 43021647
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgca 52  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  43021689 gtgagcttagcttagttggtagggacaatgcatattttatgca 43021647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 8253737 - 8253782
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  8253737 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 8253782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 13054871 - 13054916
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||||| || |||||||||||| | |||||||    
T  13054871 ttgtgagcttagcttagttggtagggacaatgcataatatatgcaa 13054916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 29701381 - 29701348
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  29701381 gtgagcttaacttagttgatatggacaatgcata 29701348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 13778873 - 13778841
Alignment:
Q  11 tgagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||||||||||||||||||| |||||||    
T  13778873 tgagcttagcttagttgatatggacgatgcata 13778841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 26755616 - 26755648
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcat 42  Q
    |||||||||||| ||||||||||||||||||||    
T  26755616 gtgagcttagctcagttgatatggacaatgcat 26755648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 10871955 - 10871912
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||    
T  10871955 gtgagcttagtttagttggtatggacaatgcataatgtatgcaa 10871912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 27718955 - 27718912
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  27718955 gtgagcttagctcagttgatatggacaatgcataatatatgcaa 27718912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 30427729 - 30427774
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  30427729 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 30427774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 44654994 - 44655027
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||||||| |||||||||||    
T  44654994 gtgagcttagcttagttgatatagacaatgcata 44655027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 24485699 - 24485742
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||| ||||||||||||||| | |||||||    
T  24485699 gtgagcttagcttagttggtatggacaatgcataatatatgcaa 24485742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 39610402 - 39610359
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  39610402 gtgagcttagctcagttgatatggacaatgcataatatatgcaa 39610359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 10515359 - 10515404
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||||||| |||||||||||||||||||| ||| | |||||||    
T  10515359 ttgtgagcttaacttagttgatatggacaatgaataatatatgcaa 10515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 22394035 - 22394068
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  22394035 gtgagcttagctcagttgatatggacaatgcata 22394068  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 33063986 - 33064029
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  33063986 gtgagcttagctcagttgatatggacaatgcataatatatgcaa 33064029  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 9799471 - 9799438
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||||||||||||| ||||||||||||||    
T  9799471 gtgagcttagcttagttgaaatggacaatgcata 9799438  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 29734689 - 29734734
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||| |||||| ||||||||||||||||||||| | |||||||    
T  29734689 ttgtgagtttagctcagttgatatggacaatgcataatatatgcaa 29734734  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 41187518 - 41187485
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||| |||||||||||||||    
T  41187518 gtgagcttagcttagttggtatggacaatgcata 41187485  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 41204562 - 41204529
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||| |||||||||||||||    
T  41204562 gtgagcttagcttagttggtatggacaatgcata 41204529  T

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Target: scaffold1694 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 160 - 198
Alignment:
Q  15 cttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  160 cttagctcagttgatatggacaatgcataatgtatgcaa 198  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 244479 - 244512
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  244479 gtgagcttagctcagttgatatggacaatgcata 244512  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 16130765 - 16130798
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||| |||||||||||||||    
T  16130765 gtgagcttagcttagttggtatggacaatgcata 16130798  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 24827048 - 24827085
Alignment:
Q  6 cattgtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  24827048 cattgttagcttagctcagttgatatggacaatgcata 24827085  T

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