View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19798_low_12 (Length: 252)

Name: NF19798_low_12
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19798_low_12
NF19798_low_12
[»] chr3 (10 HSPs)
chr3 (145-242)||(27999368-27999465)
chr3 (150-189)||(11409601-11409640)
chr3 (10-53)||(50037311-50037354)
chr3 (8-42)||(20276052-20276086)
chr3 (12-54)||(46483249-46483291)
chr3 (10-43)||(20370309-20370342)
chr3 (8-53)||(53996297-53996342)
chr3 (10-42)||(15881090-15881122)
chr3 (10-54)||(27999714-27999758)
chr3 (10-54)||(52453274-52453318)
[»] chr4 (9 HSPs)
chr4 (150-226)||(9329313-9329386)
chr4 (150-226)||(9383096-9383169)
chr4 (10-53)||(36490568-36490611)
chr4 (8-53)||(16743302-16743347)
chr4 (8-53)||(19854563-19854608)
chr4 (10-43)||(39171398-39171431)
chr4 (10-43)||(43374300-43374333)
chr4 (11-43)||(9196214-9196246)
chr4 (9-53)||(20383487-20383531)
[»] chr7 (4 HSPs)
chr7 (10-53)||(31038540-31038583)
chr7 (10-54)||(35142166-35142210)
chr7 (10-53)||(41527560-41527603)
chr7 (12-43)||(44473338-44473369)
[»] chr1 (8 HSPs)
chr1 (10-53)||(16967212-16967255)
chr1 (8-53)||(32944734-32944779)
chr1 (10-52)||(43021647-43021689)
chr1 (8-53)||(8253737-8253782)
chr1 (8-53)||(13054871-13054916)
chr1 (10-43)||(29701348-29701381)
chr1 (11-43)||(13778841-13778873)
chr1 (10-42)||(26755616-26755648)
[»] chr8 (4 HSPs)
chr8 (10-53)||(10871912-10871955)
chr8 (10-53)||(27718912-27718955)
chr8 (8-53)||(30427729-30427774)
chr8 (10-43)||(44654994-44655027)
[»] chr5 (4 HSPs)
chr5 (10-53)||(24485699-24485742)
chr5 (10-53)||(39610359-39610402)
chr5 (8-53)||(10515359-10515404)
chr5 (10-43)||(22394035-22394068)
[»] chr2 (5 HSPs)
chr2 (10-53)||(33063986-33064029)
chr2 (10-43)||(9799438-9799471)
chr2 (8-53)||(29734689-29734734)
chr2 (10-43)||(41187485-41187518)
chr2 (10-43)||(41204529-41204562)
[»] scaffold1694 (1 HSPs)
scaffold1694 (15-53)||(160-198)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-43)||(244479-244512)
[»] chr6 (2 HSPs)
chr6 (10-43)||(16130765-16130798)
chr6 (6-43)||(24827048-24827085)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 27999465 - 27999368
Alignment:
Q  145 ggtataaaaataacattacagaagaaggtgagatggttaccattattgcgttgtcttgctgttgatcctcagaaaccaatgaaactttagtatctgtg 242  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  27999465 ggtataaaaataacattacataagaaggtgagatggttaccattattacgttctcttgttgttgatcctcagaaaccaatggaactttagtatttgtg 27999368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 11409640 - 11409601
Alignment:
Q  150 aaaaataacattacagaagaaggtgagatggttaccatta 189  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  11409640 aaaaataacatcacagaagaaggtgagagggttaccatta 11409601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 50037311 - 50037354
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||    
T  50037311 gtgagcttagctcagttggtatggacaatgcataatgtatgcaa 50037354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 20276052 - 20276086
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcat 42  Q
    ||||||| |||||||||||||||||||||||||||    
T  20276052 ttgtgagtttagcttagttgatatggacaatgcat 20276086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 46483249 - 46483291
Alignment:
Q  12 gagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    |||||||||||||||| ||||||||||||||| | ||||||||    
T  46483249 gagcttagcttagttggtatggacaatgcataatatatgcaaa 46483291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 20370342 - 20370309
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  20370342 gtgagcttagctcagttgatatggacaatgcata 20370309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 53996297 - 53996342
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  53996297 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 53996342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 15881090 - 15881122
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcat 42  Q
    |||||||||||| ||||||||||||||||||||    
T  15881090 gtgagcttagctaagttgatatggacaatgcat 15881122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 27999758 - 27999714
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    |||||||||||| ||||| |||||| ||||| |||||||||||||    
T  27999758 gtgagcttagctcagttggtatggataatgcgtattgtatgcaaa 27999714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 52453318 - 52453274
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    ||||||||||||||||| ||| |||||||||||| | ||||||||    
T  52453318 gtgagcttagcttagttaatagggacaatgcataatatatgcaaa 52453274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 9329313 - 9329386
Alignment:
Q  150 aaaaataacattacagaagaaggtgagatggttaccattattgcgttgtcttgctgttgatcctcagaaaccaatga 226  Q
    ||||||||||| |||||||||||| ||| ||||||||||||   |||||| ||| ||||||||||||||||||||||    
T  9329313 aaaaataacatcacagaagaaggtaagagggttaccattat---gttgtcctgcggttgatcctcagaaaccaatga 9329386  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 9383096 - 9383169
Alignment:
Q  150 aaaaataacattacagaagaaggtgagatggttaccattattgcgttgtcttgctgttgatcctcagaaaccaatga 226  Q
    ||||||||||| |||||||||||| ||| ||||||||||||   |||||| ||| ||||||||||||||||||||||    
T  9383096 aaaaataacatcacagaagaaggtaagagggttaccattat---gttgtcctgcggttgatcctcagaaaccaatga 9383169  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36490568 - 36490611
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||    
T  36490568 gtgagcttaacttagttggtatggacaatgcataatgtatgcaa 36490611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 16743347 - 16743302
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| |||||||||||| |||||||| | |||||||    
T  16743347 ttgtgagcttagctcagttgatatggataatgcataatatatgcaa 16743302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 19854563 - 19854608
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  19854563 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 19854608  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 39171431 - 39171398
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  39171431 gtgagcttagctcagttgatatggacaatgcata 39171398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 43374333 - 43374300
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  43374333 gtgagcttagctcagttgatatggacaatgcata 43374300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 9196214 - 9196246
Alignment:
Q  11 tgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||| ||||||||||||||||||||||||    
T  9196214 tgagcttaacttagttgatatggacaatgcata 9196246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 20383487 - 20383531
Alignment:
Q  9 tgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||||||||| ||||| ||||||||||||||| | |||||||    
T  20383487 tgtgagcttagctcagttggtatggacaatgcataatatatgcaa 20383531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 31038583 - 31038540
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  31038583 gtgagcttagctcagttggtatggacaatgcatattgtatgcaa 31038540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 35142210 - 35142166
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaaa 54  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||    
T  35142210 gtgagcttagctcagttgatatggacaatgcataatatatgcaaa 35142166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 41527560 - 41527603
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||| ||||||||||||||| | |||||||    
T  41527560 gtgagcttagcttagttggtatggacaatgcataatatatgcaa 41527603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 44473369 - 44473338
Alignment:
Q  12 gagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||||||||||||||||||||||||||    
T  44473369 gagcttagcttagttgatatggacaatgcata 44473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 16967255 - 16967212
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  16967255 gtgagcttagcttagttgatatggacaatgcataatatatgcaa 16967212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 32944734 - 32944779
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||    
T  32944734 ttgtgagcttagcttagttggtatggacaatgcataatatatgcaa 32944779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 43021689 - 43021647
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgca 52  Q
    |||||||||||||||||| || |||||||||||||| ||||||    
T  43021689 gtgagcttagcttagttggtagggacaatgcatattttatgca 43021647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 8253737 - 8253782
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  8253737 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 8253782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 13054871 - 13054916
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||||| || |||||||||||| | |||||||    
T  13054871 ttgtgagcttagcttagttggtagggacaatgcataatatatgcaa 13054916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 29701381 - 29701348
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  29701381 gtgagcttaacttagttgatatggacaatgcata 29701348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 13778873 - 13778841
Alignment:
Q  11 tgagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||||||||||||||||||| |||||||    
T  13778873 tgagcttagcttagttgatatggacgatgcata 13778841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 26755616 - 26755648
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcat 42  Q
    |||||||||||| ||||||||||||||||||||    
T  26755616 gtgagcttagctcagttgatatggacaatgcat 26755648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 10871955 - 10871912
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||    
T  10871955 gtgagcttagtttagttggtatggacaatgcataatgtatgcaa 10871912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 27718955 - 27718912
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  27718955 gtgagcttagctcagttgatatggacaatgcataatatatgcaa 27718912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 30427729 - 30427774
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  30427729 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaa 30427774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 44654994 - 44655027
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||||||| |||||||||||    
T  44654994 gtgagcttagcttagttgatatagacaatgcata 44655027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 24485699 - 24485742
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||||||||| ||||||||||||||| | |||||||    
T  24485699 gtgagcttagcttagttggtatggacaatgcataatatatgcaa 24485742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 39610402 - 39610359
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  39610402 gtgagcttagctcagttgatatggacaatgcataatatatgcaa 39610359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 10515359 - 10515404
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||||||| |||||||||||||||||||| ||| | |||||||    
T  10515359 ttgtgagcttaacttagttgatatggacaatgaataatatatgcaa 10515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 22394035 - 22394068
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  22394035 gtgagcttagctcagttgatatggacaatgcata 22394068  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 33063986 - 33064029
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  33063986 gtgagcttagctcagttgatatggacaatgcataatatatgcaa 33064029  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 9799471 - 9799438
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    ||||||||||||||||||| ||||||||||||||    
T  9799471 gtgagcttagcttagttgaaatggacaatgcata 9799438  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 29734689 - 29734734
Alignment:
Q  8 ttgtgagcttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||| |||||| ||||||||||||||||||||| | |||||||    
T  29734689 ttgtgagtttagctcagttgatatggacaatgcataatatatgcaa 29734734  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 41187518 - 41187485
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||| |||||||||||||||    
T  41187518 gtgagcttagcttagttggtatggacaatgcata 41187485  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 41204562 - 41204529
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||| |||||||||||||||    
T  41204562 gtgagcttagcttagttggtatggacaatgcata 41204529  T

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Target: scaffold1694 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 160 - 198
Alignment:
Q  15 cttagcttagttgatatggacaatgcatattgtatgcaa 53  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  160 cttagctcagttgatatggacaatgcataatgtatgcaa 198  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 244479 - 244512
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||| |||||||||||||||||||||    
T  244479 gtgagcttagctcagttgatatggacaatgcata 244512  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 16130765 - 16130798
Alignment:
Q  10 gtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||||||||||||||| |||||||||||||||    
T  16130765 gtgagcttagcttagttggtatggacaatgcata 16130798  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 24827048 - 24827085
Alignment:
Q  6 cattgtgagcttagcttagttgatatggacaatgcata 43  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  24827048 cattgttagcttagctcagttgatatggacaatgcata 24827085  T

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