View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19798_low_13 (Length: 222)

Name: NF19798_low_13
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19798_low_13
NF19798_low_13
[»] chr3 (2 HSPs)
chr3 (26-69)||(20945387-20945430)
chr3 (26-69)||(26517302-26517345)
[»] chr5 (3 HSPs)
chr5 (26-60)||(35569089-35569123)
chr5 (26-69)||(38972210-38972253)
chr5 (26-68)||(27587816-27587858)
[»] chr8 (2 HSPs)
chr8 (26-71)||(14577738-14577783)
chr8 (29-58)||(14522693-14522722)
[»] chr2 (4 HSPs)
chr2 (26-71)||(2131732-2131777)
chr2 (26-60)||(27749498-27749532)
chr2 (26-59)||(45214712-45214745)
chr2 (26-58)||(38982164-38982196)
[»] chr1 (4 HSPs)
chr1 (26-71)||(27531073-27531118)
chr1 (26-69)||(13723562-13723605)
chr1 (26-69)||(23982676-23982719)
chr1 (26-56)||(32152147-32152177)
[»] chr4 (4 HSPs)
chr4 (28-71)||(50165868-50165911)
chr4 (29-71)||(29584869-29584911)
chr4 (26-56)||(41920123-41920153)
chr4 (26-71)||(54701372-54701417)
[»] chr6 (1 HSPs)
chr6 (26-59)||(22410929-22410962)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 20945387 - 20945430
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 69  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  20945387 aacttttcttaagaaatgtgaaaaatgtaaaaggtgtttacata 20945430  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 26517302 - 26517345
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 69  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  26517302 aacttttcttaagaaatgtgaaaaatgcaaagggaacttacata 26517345  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 35569089 - 35569123
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggt 60  Q
    |||||||||||||||||||||||||||||||||||    
T  35569089 aacttttcttaagaaatgtgaaaaatgtaaagggt 35569123  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 38972210 - 38972253
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 69  Q
    |||||||||||||||||||||||||||||||  || ||||||||    
T  38972210 aacttttcttaagaaatgtgaaaaatgtaaaatgtgtttacata 38972253  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 27587858 - 27587816
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacat 68  Q
    ||||||||||||||||||||||||| ||||||||  |||||||    
T  27587858 aacttttcttaagaaatgtgaaaaaagtaaagggagtttacat 27587816  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 14577738 - 14577783
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 71  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||    
T  14577738 aacttttcttaagaaatgtgaaaaatgtaaaggatgcttacataca 14577783  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 14522693 - 14522722
Alignment:
Q  29 ttttcttaagaaatgtgaaaaatgtaaagg 58  Q
    ||||||||||||||||||||||||||||||    
T  14522693 ttttcttaagaaatgtgaaaaatgtaaagg 14522722  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 2131777 - 2131732
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 71  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||    
T  2131777 aacttttcttaagaaatgtaaaaaatgtaaaaggtatttagataca 2131732  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 27749532 - 27749498
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggt 60  Q
    ||||||||||||||||||||||||| |||||||||    
T  27749532 aacttttcttaagaaatgtgaaaaaagtaaagggt 27749498  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 45214745 - 45214712
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaaggg 59  Q
    ||||||||||||||||||||||||||| ||||||    
T  45214745 aacttttcttaagaaatgtgaaaaatgcaaaggg 45214712  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 38982164 - 38982196
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagg 58  Q
    ||||||||||||||||||| |||||||||||||    
T  38982164 aacttttcttaagaaatgtaaaaaatgtaaagg 38982196  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 27531118 - 27531073
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 71  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||    
T  27531118 aacttttcttaagaaatgtgaaaaatgcaaagggaacttacataca 27531073  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 13723562 - 13723605
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 69  Q
    ||||||||||||||||||||||||||| |||||||  |||||||    
T  13723562 aacttttcttaagaaatgtgaaaaatgcaaagggtgcttacata 13723605  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 23982676 - 23982719
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 69  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  23982676 aacttttcttaagaaatgtgaaaaatgcaaaggggacttacata 23982719  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 32152177 - 32152147
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaa 56  Q
    |||||||||||||||||||||||||||||||    
T  32152177 aacttttcttaagaaatgtgaaaaatgtaaa 32152147  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 50165868 - 50165911
Alignment:
Q  28 cttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 71  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  50165868 cttttcttaagaaatatgaaaaatgtaaaaggtgtttacataca 50165911  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 29584911 - 29584869
Alignment:
Q  29 ttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 71  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  29584911 ttttcttaagaaatgtgaaaaatgcaaagggtgcttacataca 29584869  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 41920123 - 41920153
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaa 56  Q
    |||||||||||||||||||||||||||||||    
T  41920123 aacttttcttaagaaatgtgaaaaatgtaaa 41920153  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 54701372 - 54701417
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 71  Q
    |||||||||||| ||||||||||||||||||||  | |||||||||    
T  54701372 aacttttcttaaaaaatgtgaaaaatgtaaaggagacttacataca 54701417  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 22410929 - 22410962
Alignment:
Q  26 aacttttcttaagaaatgtgaaaaatgtaaaggg 59  Q
    ||||||||||||||||||||||||| ||||||||    
T  22410929 aacttttcttaagaaatgtgaaaaaagtaaaggg 22410962  T

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